View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_90 (Length: 257)
Name: NF1705_low_90
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_90 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 26 - 246
Target Start/End: Original strand, 16374494 - 16374712
Alignment:
| Q |
26 |
aatgtgtgtgcgtgtatgagagagagtttttaaaacttagaagccgtataaaaatatatagtgtttgtgcacatatttgtgtgagaaaatcatttctcaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16374494 |
aatgtgtgtgcgtgtatgagagagagtttttaaaacttagaatccgtataaa--tatacagtgtttgtgcacatatttgtgtgagaaaatcatttctcaa |
16374591 |
T |
|
| Q |
126 |
taagtaaaagtatatgctgaaattttaacatgagatattcatatatacttcctactgaatcatattatttgtcattgtttttggtttcaactgggagagc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16374592 |
taagtaaaagtatatgctgaaattttaacatgagatattcatatatacttcctactgaatcatattatttgtcattgtttttggtttcaactgggagagc |
16374691 |
T |
|
| Q |
226 |
agtggtataattctttgcgaa |
246 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
16374692 |
agtggtataattcttcgcgaa |
16374712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University