View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_91 (Length: 256)
Name: NF1705_low_91
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_91 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 9839145 - 9838930
Alignment:
| Q |
32 |
aagtccatggaaattgagttagtggatttggaattgaagaaagaaagtaaaaaaggaaggctgccatagcaggaccatattttctcccactttctttgtt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839145 |
aagtccatggaaattgagttagtggatttggaattgaagaaagaaagtaaaaaaggaaggctgccatagcaggaccatattttctcccactttctttgtt |
9839046 |
T |
|
| Q |
132 |
tgtgcaatgattttcactccactttttatcagcactatctcttgctaccaatatttaaatccattagaaacataggaaacaaaacatgcttcttatacat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9839045 |
tgtgcaatgattttcactccactttttatcagcactatctcttgctaccaatatttaaatccattagaaacataggaaacaaaacatgcttcttatacat |
9838946 |
T |
|
| Q |
232 |
tcctacctaagtataa |
247 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9838945 |
tcctacctaagtataa |
9838930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 9839273 - 9839238
Alignment:
| Q |
32 |
aagtccatggaaattgagttagtggatttggaattg |
67 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9839273 |
aagttcatggaaattgagttagtggatttggaattg |
9839238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 6852375 - 6852314
Alignment:
| Q |
88 |
aaggctgccatagcaggaccatattttctcccactttctttgtttgtgcaatgattttcact |
149 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6852375 |
aaggctgccatagcatgaccacaatttctcccactttctttgtttgtgcaatcattttcact |
6852314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 6852549 - 6852514
Alignment:
| Q |
32 |
aagtccatggaaattgagttagtggatttggaattg |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6852549 |
aagtccatggaaattgagttagtggatttggaattg |
6852514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University