View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_93 (Length: 254)
Name: NF1705_low_93
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_93 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 32424170 - 32424398
Alignment:
| Q |
20 |
cccaagcctacattccatgaagggcctcctagctgtaaattccaacaaccatataaccctttatagatcaattaaatcactctaatgaagagtatagtat |
119 |
Q |
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| T |
32424170 |
cccaagcctacattccatgaagggcctcctagctgtaaattccaacaaccatataaccctttatagatcaattaaatcactctaatgaagaggatagtac |
32424269 |
T |
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| Q |
120 |
gttatcattgtgttctattggaatatatatgatgttacataatagaatttatattttgatacaccaatttacatcaaaattccacaataatctagatggc |
219 |
Q |
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| T |
32424270 |
ggtatcattgt--tctattggaatat----gatgttacatgatagaatttatattttgaaacaccaatttacatcaaaattccacaataatctagatggc |
32424363 |
T |
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| Q |
220 |
tgacatggttcacatatgtggttaatgaatataac |
254 |
Q |
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| T |
32424364 |
tgacatggttcacatatgtggttaatgaatataac |
32424398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32431258 - 32431306
Alignment:
| Q |
20 |
cccaagcctacattccatgaagggcctcctagctgtaaattccaacaac |
68 |
Q |
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| T |
32431258 |
cccaagcctacatcccatgaagggcctcctagctgtaaattccaacaac |
32431306 |
T |
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