View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_96 (Length: 253)

Name: NF1705_low_96
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_96
NF1705_low_96
[»] chr1 (2 HSPs)
chr1 (12-253)||(27990175-27990412)
chr1 (10-253)||(28000629-28000862)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 27990175 - 27990412
Alignment:
Q  12 caacaatatgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttgatgt 111  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  27990175 caacaaaatgatacaactcaccatcaaattatagtttagcttattatatttctt----atatcatacgctacctatagttagttattagttagttgatgt 27990270  T
Q  112 gattctctacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27990271 gattctctacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttg 27990370  T
Q  212 attaattttctctctcacaatagtcatttctaagaacttaaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27990371 attaattttctctctcacaatagtcatttctaagaacttaaa 27990412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28000629 - 28000862
Alignment:
Q  10 tccaacaatatgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttgat 109  Q
    |||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||    |||||| |||||||||| ||||||||           |||    
T  28000629 tccaacaaaaggatacaactcaccatcaaactatagtttagcttattatatttctt----atatcacacgctacctagagttagtt-----------gat 28000713  T
Q  110 gtgattctctacatacgagcacat----agctatcatagaccatatactaac-actataaatgttagttgtaacttcaacattcattaagagaaatgagt 204  Q
    |||||| ||| |||| ||||||||    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28000714 gtgattttctgcataagagcacatgattagctatcatataccatatactaactactataaacgttagttgtaacttcaacattcattaagagaaatgagt 28000813  T
Q  205 ttgtttgattaattttctctctcacaatagtcatttctaagaacttaaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28000814 ttgtttgattaattttctctctcacaatagtcatttctaagaacttaaa 28000862  T

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