View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_99 (Length: 249)
Name: NF1705_low_99
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_99 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 249
Target Start/End: Complemental strand, 16591237 - 16591048
Alignment:
| Q |
53 |
tatccctagcaatagggacatcatttgtattgggcatgacaaattgtgtccgtgttannnnnnnnnnnnnnnnnnnnnngaaggatctaaaatgaaaaaa |
152 |
Q |
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| T |
16591237 |
tatccctagcaatagggatatcatttgtatcgggcatgataaattgtgtccgtgttatttttatcctttttcattttttgaaggatctaaaatgaaaaga |
16591138 |
T |
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| Q |
153 |
tgacataaagttatatttttaatagattttggacggataaaggcttggatcaaaatatatctattcagattttgatatcactcaatcaaacttaaaa |
249 |
Q |
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| T |
16591137 |
cgacataaagttatatttttaatagatcttggatgg-------cttggatcaaaatctatctatccagattttgatatcactcaatcaaacttaaaa |
16591048 |
T |
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