View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706-Insertion-10 (Length: 520)
Name: NF1706-Insertion-10
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Original strand, 23552671 - 23553159
Alignment:
| Q |
8 |
gttccgatggacattgatcgtaaaacatcagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgtt |
107 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23552671 |
gttccgatggacatttatcgtaaaacatcagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgtt |
23552770 |
T |
|
| Q |
108 |
ttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttag |
207 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552771 |
ttgatttggctaaggaacctgttcttacttgttgcggtcatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttag |
23552870 |
T |
|
| Q |
208 |
aagatcctctctagctaaagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggtt |
307 |
Q |
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| T |
23552871 |
aagatcctctctagctaaagaatgtcctgtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgaagttgaggtggtt |
23552970 |
T |
|
| Q |
308 |
cgtgctgaggattcaagttctaccactctgcaaatccctcccagacctaatgcaaggcgtgttccgagtgtctcgagtgctaaggattcaagttctacca |
407 |
Q |
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| T |
23552971 |
cgtgctgaggattcaagttctaccactctgcaaatccctcccagacctaatgcaa-gcgtgttccgagtgtctcgagtgctgaggattcaagttctacca |
23553069 |
T |
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| Q |
408 |
ctctgcaaatccctcccaggcctaatgcaaggcgtgttccgagtgtcccgagtgctgaggattcaagttcgacattctttcctttttcca |
497 |
Q |
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| T |
23553070 |
ctctgcaaatccctcccaggcctaatgcaaggcgtgttccgagtgtctcgagtgctgaggattcaagttcaacattatctcctttttcca |
23553159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 27 - 369
Target Start/End: Original strand, 23305210 - 23305552
Alignment:
| Q |
27 |
gtaaaacatcagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcc |
126 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23305210 |
gtaagacatcagagaaaaaggagaatattgatgaaaaggattgtggcaatgatagaggtttctatgattgtaatatttgttttgtattggctaaggatcc |
23305309 |
T |
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| Q |
127 |
tgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttagaagatcctctctagctaaa |
226 |
Q |
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| T |
23305310 |
tgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttgaatacaaaatcaccattgtcgtttacaagatcctctctagctaaa |
23305409 |
T |
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| Q |
227 |
gaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattcaagtt |
326 |
Q |
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| T |
23305410 |
gaatgtcctgtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattcaagtt |
23305509 |
T |
|
| Q |
327 |
ctaccactctgcaaatccctcccagacctaatgcaaggcgtgt |
369 |
Q |
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| T |
23305510 |
ctaccactctgcaaatccctcccagacctaatgcaaggcgtgt |
23305552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 23324170 - 23324260
Alignment:
| Q |
91 |
tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg |
181 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23324170 |
tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttg |
23324260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 23234927 - 23235073
Alignment:
| Q |
32 |
acatcagagaaaaaggagaatgttgatgaaaaggattgtggcaatgatagatgtttctatgattgtaatatttgttttgatttggctaaggatcctgttc |
131 |
Q |
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||||| ||||||||||||||||||||| || | |||||| | | | || ||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
23234927 |
acatcggagaaaaaggagaatgttgat---aacggttgtggtagtaaaggaggtttctatgattgtaatatttgtttaggtttggctaaggatcctgttg |
23235023 |
T |
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| Q |
132 |
ttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg |
181 |
Q |
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| ||| |||| || |||||||| ||||||||||| || |||||||||||| |
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| T |
23235024 |
tgactcgttgcggtcatttgttctgttggccatgtttatatagatggttg |
23235073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 23305492 - 23305552
Alignment:
| Q |
384 |
gtgctaaggattcaagttctaccactctgcaaatccctcccaggcctaatgcaaggcgtgt |
444 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23305492 |
gtgctgaggattcaagttctaccactctgcaaatccctcccagacctaatgcaaggcgtgt |
23305552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 23235094 - 23235231
Alignment:
| Q |
223 |
taaagaatgtcctgtctgtaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgacgtcgaggtggttcgtgctgaggattca |
322 |
Q |
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||||||||||||||| || ||||| ||||||| ||||||| |||| ||| || ||||||||||||||||| ||||| |||| || ||||||||| |
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| T |
23235094 |
taaagaatgtcctgtttgcaagggggaagttaaggataagaaggttattcctatatatggtggtgggaatgatgtcga---ggttggtcacgaggattca |
23235190 |
T |
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| Q |
323 |
agttctaccactctgcaaatccctcccagacctaatgcaaggcg |
366 |
Q |
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|| | |||||||||||||||||| |||||||||||||||||| |
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| T |
23235191 |
agct---ccactctgcaaatccctcgcagacctaatgcaaggcg |
23235231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 23235195 - 23235231
Alignment:
| Q |
405 |
ccactctgcaaatccctcccaggcctaatgcaaggcg |
441 |
Q |
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|||||||||||||||||| ||| |||||||||||||| |
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| T |
23235195 |
ccactctgcaaatccctcgcagacctaatgcaaggcg |
23235231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 37120092 - 37120179
Alignment:
| Q |
91 |
tgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatgg |
178 |
Q |
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|||||||||||| ||||| |||||||| ||||| |||||| | ||||| ||||||||| |||||||||||| ||||| ||| ||||| |
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| T |
37120092 |
tgattgtaatatctgtttggatttggccaaggagcctgttttgacttgctgtggccatctgttttgttggcagtgcttatatcgatgg |
37120179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 10174769 - 10174692
Alignment:
| Q |
85 |
tttctatgattgtaatatttgttttgatttggctaaggatcctgttcttacttgttgtggccatttgttttgttggcc |
162 |
Q |
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||||| |||||||||||||||||| ||| | || | ||||||||| | || |||||||| ||||||||||||||||| |
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| T |
10174769 |
tttctttgattgtaatatttgtttggatattgcaagagatcctgttttgacatgttgtggtcatttgttttgttggcc |
10174692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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