View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706-Insertion-12 (Length: 522)
Name: NF1706-Insertion-12
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Original strand, 388538 - 389005
Alignment:
| Q |
7 |
aaaaaactcataaaggaaaaatggaaaacttttgagatagatggttgaggagattttattctcaaggaaaaatttaaactgttgaa-------atctagc |
99 |
Q |
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| T |
388538 |
aaaaaactcataaaggaaaaatgacaaacttttgagatagacggttgaggagattttattctcaaggaaaaatttaaaccgttgaaatctgaaatctagc |
388637 |
T |
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| Q |
100 |
ttgaaagactaacatctggtgcatggtgcgaatattaagaggaaacgtaaagctgcaaatgaacttctttttcacattgacatggaacataaagcaggtg |
199 |
Q |
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| T |
388638 |
ttgaaagactaacatctggtgcatggtgcgaatattaataggaaacataaaactgcaaaggaacgtctttttcacattgacatggaacataaagcaggtg |
388737 |
T |
|
| Q |
200 |
agttagatgttgttgaaagggaagttctgtggactattttatcttaggtgttctctttatcaagaatcaattgtagtatgtagcaacgaaaagagaggtt |
299 |
Q |
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| T |
388738 |
agttagatgttgttgaaagggaagttccgtggactattttatcttaggtgttctctttatcaagaatcaattgtagtatgtagcaacgaaaagagaggtt |
388837 |
T |
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| Q |
300 |
gttatggctcaaagtagcaaatgctcactttaaatttttccatggcgtgatgacttgtaagaaacggggaaatgcaatttctatgacaaagtggaaagag |
399 |
Q |
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| T |
388838 |
gttatggctcaaagtagcaaatgctcactctaaatttttccatggcgtgatgactcgtaagaaacggggaaatgcaatttctatgacaaagtggaaagag |
388937 |
T |
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| Q |
400 |
taaccaatgttt-aaatgacgtgttcacacattttaattataatttccggtatgttcttcttgtgcga |
466 |
Q |
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| T |
388938 |
taaccaatgtttaaaatgatgtgttcacacattttaattataatttccggtatgtttttcttgagcga |
389005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 500
Target Start/End: Original strand, 389087 - 389122
Alignment:
| Q |
465 |
gaggttaagatgacagtttgagattgtgatattttt |
500 |
Q |
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| T |
389087 |
gaggttaagatgacagtttgagattgtgatattttt |
389122 |
T |
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