View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706-Insertion-13 (Length: 529)

Name: NF1706-Insertion-13
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706-Insertion-13
NF1706-Insertion-13
[»] chr3 (24 HSPs)
chr3 (7-529)||(679243-679766)
chr3 (7-289)||(747402-747684)
chr3 (287-529)||(751050-751290)
chr3 (87-280)||(2501751-2501944)
chr3 (47-270)||(2659420-2659643)
chr3 (166-282)||(7324687-7324803)
chr3 (164-282)||(2491753-2491871)
chr3 (87-270)||(2644633-2644819)
chr3 (164-285)||(9594898-9595019)
chr3 (164-282)||(9566094-9566212)
chr3 (164-273)||(7443269-7443378)
chr3 (39-119)||(2635214-2635294)
chr3 (164-282)||(2474776-2474895)
chr3 (175-282)||(9562235-9562342)
chr3 (164-274)||(754888-754998)
chr3 (289-449)||(2632504-2632659)
chr3 (34-143)||(9595049-9595158)
chr3 (44-143)||(2474651-2474749)
chr3 (164-262)||(7334560-7334658)
chr3 (164-289)||(2631013-2631138)
chr3 (164-282)||(2476308-2476426)
chr3 (87-149)||(2630909-2630971)
chr3 (46-116)||(7324862-7324932)
chr3 (28-68)||(9566320-9566360)


Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 7 - 529
Target Start/End: Complemental strand, 679766 - 679243
Alignment:
Q  7 aatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  679766 aatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttgttgtggaatc 679667  T
Q  107 cttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgt 206  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679666 cttccgttagaaagtataagttactccctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgt 679567  T
Q  207 tgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679566 tgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccct 679467  T
Q  307 gcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679466 gcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtata 679367  T
Q  407 aagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca-nnnnnnnnnnctttctagttcttagaatt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||           |||||||||||| ||||||    
T  679366 aagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcatttttttttttctttctagttctgagaatt 679267  T
Q  506 agaagaatgctgcgtatatttgag 529  Q
    ||||||||||||||||||||||||    
T  679266 agaagaatgctgcgtatatttgag 679243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 747684 - 747402
Alignment:
Q  7 aatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatc 106  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  747684 aatactcttacaattcgaggtaactttgtggacgtaatgtgatcttgcgatggcatcttttgctgcatgctaaaagctggttcatatttgttgtggaatc 747585  T
Q  107 cttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  747584 cttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataattataaggtcgt 747485  T
Q  207 tgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatt 289  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  747484 tgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 287 - 529
Target Start/End: Complemental strand, 751290 - 751050
Alignment:
Q  287 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  387 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  487 ctttctagttcttagaattagaagaatgctgcgtatatttgag 529  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  751091 -tttctagttcttagaattagaagaatgctgcgtatatttgag 751050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 87 - 280
Target Start/End: Original strand, 2501751 - 2501944
Alignment:
Q  87 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttc 186  Q
    ||||||||| |||||||| |||||||||| ||||| || |||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  2501751 ttcttatttcttgtggaacccttccattacaaagtttaagttattgcctcctttggagaatcacgaatggacatcactaagctttggatatgatcatttc 2501850  T
Q  187 attgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcc 280  Q
    ||||||||  |||||||  |||||||||||   ||||| || ||| | |||||||||||||||  ||||||||||| ||  ||||||| |||||    
T  2501851 attgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggactgattattggagaaagatagaggacatcc 2501944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 47 - 270
Target Start/End: Complemental strand, 2659643 - 2659420
Alignment:
Q  47 gctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaa 146  Q
    |||||||||||||||| |||||  | | ||| ||   |||||||||||| || ||||| |||||||||||||||| || |||| | |||||||||  |||    
T  2659643 gctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttatggaacccttccattagaaagtttaagttattgcctcctttgcggaa 2659544  T
Q  147 tcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttg 246  Q
    ||||| |||| ||| |||||||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | || ||||||||||||||    
T  2659543 tcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttg 2659444  T
Q  247 ggggatgattattggacaagaata 270  Q
    |||  ||||||||||| |||||||    
T  2659443 gggactgattattggagaagaata 2659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
Q  166 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 265  Q
    |||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||    
T  7324803 agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa 7324704  T
Q  266 gaatagagggcatccca 282  Q
    ||||||||| |||||||    
T  7324703 gaatagaggacatccca 7324687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 2491753 - 2491871
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    |||||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||    
T  2491753 taagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggac 2491852  T
Q  264 aagaatagagggcatccca 282  Q
    ||||||  ||| |||||||    
T  2491853 aagaatcaaggacatccca 2491871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 270
Target Start/End: Complemental strand, 2644819 - 2644633
Alignment:
Q  87 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcaca----tatggacatcactaagctttggatatgatca 182  Q
    ||||||||| |||||||| |||||| ||||||||| || |||| | ||||||||||| | |||||    |||  | | ||||||||||||||||||||||    
T  2644819 ttcttatttcttgtggaacccttccgttagaaagtttaagttattgcctcctttggaaagtcacaattttatc-agaacactaagctttggatatgatca 2644721  T
Q  183 tttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaata 270  Q
     ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  |||||||||||||||||||    
T  2644720 cttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattggacaagaata 2644633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 285
Target Start/End: Complemental strand, 9595019 - 9594898
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    ||||||| || ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  ||||||||||||    
T  9595019 taagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggac 9594920  T
Q  264 aagaatagagggcatcccacat 285  Q
    ||||||||||| ||||||||||    
T  9594919 aagaatagaggacatcccacat 9594898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 9566212 - 9566094
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    |||| ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  ||||||||||||    
T  9566212 taagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggac 9566113  T
Q  264 aagaatagagggcatccca 282  Q
    ||||||||||| |||||||    
T  9566112 aagaatagaggacatccca 9566094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 7443378 - 7443269
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    |||| ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  |||||||||||     
T  7443378 taagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggag 7443279  T
Q  264 aagaatagag 273  Q
    ||||||||||    
T  7443278 aagaatagag 7443269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 2635214 - 2635294
Alignment:
Q  39 cgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaa 119  Q
    ||||| |||||||||||||||||||||| || |  |||| |||||||||||||||||  ||||||| ||||||||||||||    
T  2635214 cgtaacgtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaa 2635294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 2474776 - 2474895
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattgga 262  Q
    |||||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| |||||||||||    
T  2474776 taagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattgga 2474875  T
Q  263 caagaatagagggcatccca 282  Q
    |||||||||||| |||||||    
T  2474876 caagaatagaggacatccca 2474895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  175 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 274  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  275 gcatccca 282  Q
     |||||||    
T  9562242 acatccca 9562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 754998 - 754888
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    |||||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  ||||||||||||    
T  754998 taagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggac 754899  T
Q  264 aagaatagagg 274  Q
    |||||||||||    
T  754898 aagaatagagg 754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 449
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  289 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 384  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  385 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 449  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 9595158 - 9595049
Alignment:
Q  34 gtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttc 133  Q
    ||||||||| ||||||||||||||||||| ||||| ||  | || ||  ||||||||||| | |||||||| |||||||||||||| | || |||| | |    
T  9595158 gtggacgtattgtgctcttgcgatggcattttttgttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttattgc 9595059  T
Q  134 ctcctttgga 143  Q
    ||||||||||    
T  9595058 ctcctttgga 9595049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 2474651 - 2474749
Alignment:
Q  44 tgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttgga 143  Q
    |||||||||| ||||||||||||||| ||| ||| |||| ||| |||||||| |||||||| ||||||||| |||| | || |||| | |||||||||||    
T  2474651 tgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcctcctttgga 2474749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 7334658 - 7334560
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 262  Q
    ||||||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 2631013 - 2631138
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    |||||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  |||||||||||     
T  2631013 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaa 2631112  T
Q  264 aagaatagagggcatcccacattatt 289  Q
    ||||||||| | ||||||| ||||||    
T  2631113 aagaatagacgacatcccatattatt 2631138  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 2476308 - 2476426
Alignment:
Q  164 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 263  Q
    |||||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  ||||||||||||    
T  2476308 taagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggac 2476407  T
Q  264 aagaatagagggcatccca 282  Q
    ||||||  ||| |||||||    
T  2476408 aagaatgcaggacatccca 2476426  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 2630909 - 2630971
Alignment:
Q  87 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatca 149  Q
    ||||||||| |||||||| |||||||||||||||| || |||| | ||||| ||||| |||||    
T  2630909 ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccattggaaaatca 2630971  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 7324932 - 7324862
Alignment:
Q  46 tgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattag 116  Q
    |||||||| |||||||| ||||   ||||||| |||| |||||||||||  |||||||| |||||||||||    
T  7324932 tgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattag 7324862  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 9566360 - 9566320
Alignment:
Q  28 aactttgtggacgtaatgtgctcttgcgatggcatcttttg 68  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  9566360 aactatgtggacttaacgtgctcttgcgatggcatcttttg 9566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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