View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706-Insertion-16 (Length: 724)
Name: NF1706-Insertion-16
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706-Insertion-16 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Original strand, 24941489 - 24941999
Alignment:
| Q |
8 |
gtaacttgtcggcagcttgacttccatttagatatatagatgaaatttggaaaaggaaaaaattgttatattgctttnnnnnnnntgagaattgtgatga |
107 |
Q |
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| T |
24941489 |
gtaacttgttggcagcttgacttccatttagatatatagatgaaatttggaaaagaaaaaaattgttatattgctttaaaaaaaatgagaattgtgatga |
24941588 |
T |
|
| Q |
108 |
tcaattgtgaagtgccaagtatctaccgttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatttggnnnnnnngccaggacaatgt |
207 |
Q |
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| T |
24941589 |
tcaattgtgaagtgccaagtatctaccgttgttaacgcttatatggtcgtgctcatgttatcataacagaccaaatttggtttttttgcccggacaatgt |
24941688 |
T |
|
| Q |
208 |
agttctagaagtaattttctaatccaacatgattcagacactaaattaagtactccacgatattcatcctacgtgccagaccgagataaggtgtgatgcc |
307 |
Q |
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| T |
24941689 |
agttctaaaagtaattttctattccaacatgattcagacactaaattaagtactccacgatattcgtcctacgtgccagaccgagataaggtgtgatgcc |
24941788 |
T |
|
| Q |
308 |
ttttcgcaaactacgagatcaaattatgattaggtataaacaataaccaaaaatagaccttctgatgtctggacatccaccccagtctgaatcattctaa |
407 |
Q |
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| T |
24941789 |
ttttcgcaaactacgagatcaaattatgattaggtataaacaataacc--aaatagaccttttgatgtctggacatccaccccagtctgaatcattgtaa |
24941886 |
T |
|
| Q |
408 |
aagataaacttattgatggaggaaggatacatgtgcaggctgggatcaataatgccctgaatatagtgaatgatgcgcttcaatgccgacatatgttgta |
507 |
Q |
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| T |
24941887 |
aagataagcttattgatggaggaaggatacacgtgaaggctgggatcaataatgccctgaatatagtgaatgacgcgcttcaatgccgacatatgttgtg |
24941986 |
T |
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| Q |
508 |
tttttggattacg |
520 |
Q |
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| T |
24941987 |
tttttggattacg |
24941999 |
T |
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Back To:
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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 5417078 - 5417135
Alignment:
| Q |
198 |
aggacaatgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
255 |
Q |
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|||||||||||||||| |||| | ||||||||||||||||||||| |||||| |||| |
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| T |
5417078 |
aggacaatgtagttctgaaagttagtttctaatccaacatgattcaaacactacatta |
5417135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 875534 - 875584
Alignment:
| Q |
205 |
tgtagttctagaagtaattttctaatccaacatgattcagacactaaatta |
255 |
Q |
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| T |
875534 |
tgtagttctaaaagtagatttcaaatccaacatgattcagacactacatta |
875584 |
T |
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