View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706-Insertion-17 (Length: 835)
Name: NF1706-Insertion-17
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706-Insertion-17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 288 - 835
Target Start/End: Original strand, 17746246 - 17746793
Alignment:
| Q |
288 |
agattcagttgatgtccaaggttcaccagagtcgaagaaaatctaagactcaaaatatttatagatgttcttatatattatctatcaacgtagtatttat |
387 |
Q |
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| T |
17746246 |
agattcagttgatgtctaaggttcaccaaagtcaaagaaaatctaagactcaaaatatttatagatgttcttatatattatctatcaacgtagtatttat |
17746345 |
T |
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| Q |
388 |
attgacattagattcaaatccaagtcatattaaaatatgagttgaattctaactaaatctaaatcataccaactgaatcaacttttgttgaccgtaaaaa |
487 |
Q |
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| T |
17746346 |
attgacattagattcaaatccaagtcatattaaaatatgagttgaattctaaccgaatctaaatcatactaactgaatcaacttttgttgaccgcaaaaa |
17746445 |
T |
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| Q |
488 |
cttcttttggttttgactaataacagtttataatattaaacgtttgtctaattacatatttaatagacaaagattagctgcttattatattaatcatggt |
587 |
Q |
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| T |
17746446 |
cttcttttggttttgtctaataacagtttataatattaaacgtttgtctaatcacatatttaatagacaaagattaggtgcttattatattaatcatggt |
17746545 |
T |
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| Q |
588 |
ttgtttctattgttatataggaaaagcctatgatttgtccccttccaggaggaaggatgataactactagagaggaacatgttctaatctacttgattgt |
687 |
Q |
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| T |
17746546 |
ttgtttctattgttatattggaaaagcctatgatttgtccccttccaggaggaaggatgataactactagagaggaacatgttctaatctacttgattgt |
17746645 |
T |
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| Q |
688 |
atgatttgtagtcacatcttttgttaaaagtattgtctttttcccttttcacagttggatctaaccccttccctagtgaatagtccattgtactttaatg |
787 |
Q |
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| T |
17746646 |
ataatatgtagtcacatctttttttaaaagtattgtctttttcccttttcacaattggatctaaccccttccctagtgaatagtccattgtactttaatg |
17746745 |
T |
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| Q |
788 |
catcttccaataattcaaatggaatagaacacaaacgtgctagtgaga |
835 |
Q |
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| T |
17746746 |
catcttccaataattcaaatggaatagaacacaaacgtgctagtgaga |
17746793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 17745938 - 17746213
Alignment:
| Q |
7 |
aagtagtaatattatgatgactttttggagtgcaaaagggtcagatgaattggaaaggttcttaaaggaaaacccaattacgtgaaggaaaagactaaag |
106 |
Q |
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| T |
17745938 |
aagtagtaatattatgatgactttttcgagtgcaaaagggtcagatgaattggaaaggttcttaaaggaaaacacaattatgtgaaggaaaagactaaag |
17746037 |
T |
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| Q |
107 |
ctagatagaaaagaaaggaagtagatgcaagagagggttttaaatgagtagcatatttaagagtagctctataagtaggctaatggaagatgcaaaatgt |
206 |
Q |
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| T |
17746038 |
ctagatagaaaagaaaggaagtagatgcaagagagggttttaaatgagtagcatatttaagagtagctctataagtaggctaatggaagatgcaaaatgt |
17746137 |
T |
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| Q |
207 |
caagtaagtaggaccatatgcttgtagcttaattgacaattcaccaataatgtttacaaggaaattccgagttgat |
282 |
Q |
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| T |
17746138 |
caagtaagtaggaccatatgcttgtagcttaattgacaattcaccaataatgtttacaaggaaattccgagttgat |
17746213 |
T |
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