View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706-Insertion-5 (Length: 339)
Name: NF1706-Insertion-5
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706-Insertion-5 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 39112397 - 39112066
Alignment:
| Q |
8 |
acttgcaccccttctgtctctatctcatattttattgattagtcagtcatacctgttgacatttatgtaaacaaataattaatatcttctgaatttacac |
107 |
Q |
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| T |
39112397 |
acttgcaccccttctgtctctatctcatattttattgattagtcagtcatacctgttgacatttatgtaaacaaataatgaatatcttctgaatttacac |
39112298 |
T |
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| Q |
108 |
ccacaatcatatctttgaatgaatatctaacctaaggtattgatattaatagtttgagatatactttatggactcttnnnnnnnnttaaactatttcata |
207 |
Q |
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| T |
39112297 |
ccacaatcatatctttgaatgaatatctaacctaaggtattgatattaatagtttgagatatactttatggactcttacaaaaaattaaactatttcata |
39112198 |
T |
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| Q |
208 |
tcaataggaatcaaaatcgcaaaacacttgttaatcttatcaaaaatttgaaaaatagttttacaatgtcaccaataagacatttattaatttgcccata |
307 |
Q |
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| T |
39112197 |
tcaataggaatcaaaatcgcaaaacacttgttaatcttatcaaaaatttgaaaaatagttttacaatgtcaccaataagacatttattaatttgcccata |
39112098 |
T |
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| Q |
308 |
agtcttagtttaatggacaaaaaatatcgata |
339 |
Q |
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| T |
39112097 |
agtcttagtttaatggacaaaaaatatcgata |
39112066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 39109879 - 39109829
Alignment:
| Q |
216 |
aatcaaaatcgcaaaacacttgttaatcttatcaaaaatttgaaaaatagt |
266 |
Q |
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| T |
39109879 |
aatcaaaatcgcaaaacacttgttaatcttatcaaaaaattgaaaagtagt |
39109829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 39103443 - 39103375
Alignment:
| Q |
10 |
ttgcaccccttctgtctctatctcatattttattgattagtcagtcatacctgttgacatttatgtaaacaaa |
82 |
Q |
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| T |
39103443 |
ttgcacccctttggtctctatctcgtattttattgatgagtca----tacctgttgacatttatgtaaacaaa |
39103375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 39102577 - 39102529
Alignment:
| Q |
213 |
aggaatcaaaatcgcaaaacacttgttaatcttatcaaaaatttgaaaa |
261 |
Q |
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| T |
39102577 |
aggaatcaaaatcgcaaaacacttgctaatcttataaaaaaattgaaaa |
39102529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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