View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706-Insertion-6 (Length: 387)
Name: NF1706-Insertion-6
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 40265493 - 40265872
Alignment:
| Q |
8 |
gagtcaactatatgaatcaaattacactttaatgttaagaaaagttagttagagttcgtttgggggagggccgcttctacctataaactcatatttacgg |
107 |
Q |
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| T |
40265493 |
gagtcgactatatggatcaaattacactttaatgttaagaaaagttagttagagttcgtttgggggagggccgcttctacctataaactcatatttacgg |
40265592 |
T |
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| Q |
108 |
tttatcttatctaatgtcgaactcttaacacccccctcatatcgagaactgaacatctgaagcgtgaccaaatgttctgaactcttaacagccccccatt |
207 |
Q |
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| T |
40265593 |
tttatcttatctaacgtggaactcttaacatccccctcatatcgagaactgaacatctgaagcgtgaccaaatattctgaactcttaacagccccccatt |
40265692 |
T |
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| Q |
208 |
aaattttaattttgtttaacatatatatgtacatattataatccattatttcatctatgcgatatcttctagttttttctttcttctgatattagtaata |
307 |
Q |
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| T |
40265693 |
aaattttaattttgtttaacatatatatgtacatattataatccattatttcagctatgcgatatcttctagttttttctttcttctgatattagtaata |
40265792 |
T |
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| Q |
308 |
ttaaaataaaatatcggtcagtttannnnnnnaaagttacaatactagctaggtgtaatttatatttctccttgtgacta |
387 |
Q |
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| T |
40265793 |
ttaaaataaaatattggtcagtttatttttttaaagttacaatactagctaggtgtcatttatatttctccttgtgacta |
40265872 |
T |
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