View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706-Insertion-7 (Length: 420)

Name: NF1706-Insertion-7
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706-Insertion-7
NF1706-Insertion-7
[»] chr1 (2 HSPs)
chr1 (8-420)||(3534341-3534753)
chr1 (222-267)||(52363015-52363060)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 3534341 - 3534753
Alignment:
Q  8 atatatacaggagtaagttgtgataatatctccaaaatccactaaagaacatatgtttatctcacattttggttaatttaatcattacaatgttaattaa 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534341 atatatacaggagtaagttgtgataatatcttcaaaatccactaaagaacatatgtttatctcacattttggttaatttaatcattacaatgttaattaa 3534440  T
Q  108 ggaagcagaagagggaggataaatcataataattcgggtctgtttttgtttagaagaaaatcattcaggtctattgtttttgcatagaatataataaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534441 ggaagcagaagagggaggataaatcataataattcgggtctgtttttgtttagaagaaaatcattcaggtctattgtttttgcatagaatataataaacc 3534540  T
Q  208 taataatgtatctttgaacataactcagttgacagaaataatgaattgttataggtagggttttggtgcgaactccaaacaactcatttgttcatcttga 307  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |    
T  3534541 taataatgtatccttgaacataactcagtagacaaaaataatgaattgttatatgtagggttttggttcgaactccaaacaactcatttattcatcttaa 3534640  T
Q  308 aaagtgatttctaaccattaaactacttgatcagtaaataataaaccaaatagtgattgtcacaaatatttttgttaaggnnnnnnnngataaaatttac 407  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  3534641 aaagtgatttctaatcattaaactacttgatcaataaataataaaccaaatagtgattgtcacaaatatttttgttaaggaaaaaaaagataaaatttac 3534740  T
Q  408 atatctttcttca 420  Q
    |||||||||||||    
T  3534741 atatctttcttca 3534753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 52363015 - 52363060
Alignment:
Q  222 tgaacataactcagttgacagaaataatgaattgttataggtaggg 267  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||||    
T  52363015 tgaacatagttcagttgacagaaataatgcattgttatatgtaggg 52363060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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