View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706-Insertion-8 (Length: 529)

Name: NF1706-Insertion-8
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706-Insertion-8
NF1706-Insertion-8
[»] scaffold0009 (5 HSPs)
scaffold0009 (274-520)||(39178-39425)
scaffold0009 (8-199)||(39509-39717)
scaffold0009 (8-76)||(33028-33096)
scaffold0009 (30-75)||(21382-21427)
scaffold0009 (122-158)||(21339-21375)
[»] chr5 (2 HSPs)
chr5 (428-504)||(17474862-17474939)
chr5 (457-505)||(42419989-42420037)
[»] chr6 (3 HSPs)
chr6 (428-499)||(1473593-1473665)
chr6 (427-503)||(12424942-12425017)
chr6 (457-498)||(7303458-7303499)
[»] chr4 (5 HSPs)
chr4 (416-502)||(52374892-52374980)
chr4 (429-502)||(15134657-15134731)
chr4 (431-498)||(3688663-3688731)
chr4 (426-474)||(3688573-3688622)
chr4 (427-498)||(15134546-15134618)
[»] chr2 (4 HSPs)
chr2 (430-501)||(42094293-42094365)
chr2 (429-499)||(12779480-12779550)
chr2 (432-502)||(2302034-2302104)
chr2 (433-503)||(18719707-18719776)
[»] chr3 (7 HSPs)
chr3 (427-509)||(29955006-29955089)
chr3 (427-509)||(30004160-30004243)
chr3 (426-499)||(31205347-31205421)
chr3 (430-498)||(49750581-49750650)
chr3 (427-505)||(3901581-3901659)
chr3 (427-498)||(32880976-32881048)
chr3 (460-504)||(35415091-35415135)
[»] chr1 (5 HSPs)
chr1 (432-498)||(939311-939380)
chr1 (451-503)||(7444255-7444307)
chr1 (460-498)||(24181132-24181170)
chr1 (430-502)||(49822619-49822692)
chr1 (416-470)||(45925184-45925240)
[»] chr8 (7 HSPs)
chr8 (458-504)||(18998156-18998202)
chr8 (432-499)||(13772375-13772443)
chr8 (429-503)||(23848240-23848313)
chr8 (458-504)||(8402596-8402642)
chr8 (460-504)||(17893438-17893482)
chr8 (458-498)||(40694592-40694632)
chr8 (458-498)||(40696308-40696348)
[»] chr7 (8 HSPs)
chr7 (460-498)||(22026111-22026149)
chr7 (432-504)||(26647783-26647856)
chr7 (416-499)||(5443606-5443690)
chr7 (429-488)||(24516646-24516704)
chr7 (427-504)||(26863001-26863079)
chr7 (427-505)||(40134474-40134551)
chr7 (432-499)||(5452667-5452735)
chr7 (431-494)||(47497792-47497856)
[»] scaffold0003 (1 HSPs)
scaffold0003 (431-503)||(136413-136486)


Alignment Details
Target: scaffold0009 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 274 - 520
Target Start/End: Complemental strand, 39425 - 39178
Alignment:
Q  274 tatttgttggtcagcaaaaatctgttggtcaaacaaaattataaatgcacatttataataagctttctgaccnnnnnnnttcatatcttaattatttcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||  || |||||    
T  39425 tatttgttggtcagcaaaaatctgttggtcaaacaaaattataaatgcacatttataataagctttctgaccaaaaaaattcatatcttatctacttcta 39326  T
Q  374 ttatttttaatgattttctttt-nnnnnnnngtattatttttaataatttggtagacccatgtgaattttaatcaatcaagaatatgtgttgaaaaatgt 472  Q
    ||||||||||||||||||||||         |||||||||||||| |||||||||  |||||||||||||||||||||||  |||||||||||||||| |    
T  39325 ttatttttaatgattttcttttataaaaaaagtattatttttaatgatttggtaggaccatgtgaattttaatcaatcaaagatatgtgttgaaaaatat 39226  T
Q  473 gtattaaaacgtgtgttgttagcattcctcttaaaattatacgacgat 520  Q
     |||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  39225 atattaaaatgtgtgttattagcattcctcttaaaatgatacgacgat 39178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 39717 - 39509
Alignment:
Q  8 tgatggacctcgactttgtcgtatgttttactcttttattgatcactgatggctgcatcatgatcaaatgaaatcgatggagaaagaga----------- 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  39717 tgatggacctcgactttgtcgtatgttttactcttttattgatcactgatggctgcatcatgatcaaatgaaatcgatggagaaagagaaataattttga 39618  T
Q  97 ------gaacgagaaaatgatactaaaaacttgtgtgggtatcaggyttgtgaaacgtgagtatttattgtgactcttgacaaaatttgattggctgaaa 190  Q
          |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39617 tagggagaacgagaaaatgatagtaaaaacttgtgtgggtatcaggtttgtgaaacgtgagtatttattgtgactcttgacaaaatttgattggctgaaa 39518  T
Q  191 tctaatagg 199  Q
    || ||||||    
T  39517 tccaatagg 39509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 33096 - 33028
Alignment:
Q  8 tgatggacctcgactttgtcgtatgttttactcttttattgatcactgatggctgcatcatgatcaaat 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  33096 tgatggacctcgactttgtcgtatgttttactcttttattgatcaccgatggctgcatcattatcaaat 33028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 21427 - 21382
Alignment:
Q  30 atgttttactcttttattgatcactgatggctgcatcatgatcaaa 75  Q
    |||||||||||||||||||||| | |||||||||||| | ||||||    
T  21427 atgttttactcttttattgatcgccgatggctgcatcgttatcaaa 21382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 21375 - 21339
Alignment:
Q  122 tgtgtgggtatcaggyttgtgaaacgtgagtatttat 158  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  21375 tgtgtgggtatcagggttgtgaaacgtgaatatttat 21339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 17474862 - 17474939
Alignment:
Q  428 acccatgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    ||||||||||||||||||||||||| || | ||||||||||| ||||| |||||| || |||||||||||||||||||    
T  17474862 acccatgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtatgttgttagcattcctctt 17474939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 42420037 - 42419989
Alignment:
Q  457 atgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctta 505  Q
    |||||||||||||||||| ||| || | |||||||||||||||||||||    
T  42420037 atgtgttgaaaaatgtgtgttagaatgagtgttgttagcattcctctta 42419989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 1473665 - 1473593
Alignment:
Q  428 acccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattc 499  Q
    ||||||||||||||||| |||||||  ||| |||||||||||||||||||||||| |||||||| ||||||||    
T  1473665 acccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgttgctagcattc 1473593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 503
Target Start/End: Original strand, 12424942 - 12425017
Alignment:
Q  427 gacccatgtgaattttaatcaatcaagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctct 503  Q
    ||||||||||||| |||| |||||||||  |||||||| |||||||   |||||| |||||||||||||||||||||    
T  12424942 gacccatgtgaatgttaaccaatcaagagaatgtgttg-aaaatgtaggttaaaatgtgtgttgttagcattcctct 12425017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 7303499 - 7303458
Alignment:
Q  457 atgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    |||| |||||||| ||||||||||| ||||||||||||||||    
T  7303499 atgtattgaaaaacgtgtattaaaatgtgtgttgttagcatt 7303458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 502
Target Start/End: Complemental strand, 52374980 - 52374892
Alignment:
Q  416 ataatttggt-agacccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctc 502  Q
    |||||||||| ||| ||||||||||||||||| |||||  | | ||||||||||| ||||| |||||| ||||||||||||||||||||    
T  52374980 ataatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctc 52374892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 502
Target Start/End: Original strand, 15134657 - 15134731
Alignment:
Q  429 cccatgtgaattttaatcaatca-agaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctc 502  Q
    |||||||||||||||| |||||| |||   ||||||||||| ||||  |||||| ||||||||||||||||||||    
T  15134657 cccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgtgttgttagcattcctc 15134731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 3688663 - 3688731
Alignment:
Q  431 catgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    |||||||||||||| ||||||| |||  ||||||| ||| ||| |||||||| ||||||||||||||||    
T  3688663 catgtgaattttaaccaatcaaagaaagtgtgttggaaagtgtatattaaaatgtgtgttgttagcatt 3688731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 474
Target Start/End: Complemental strand, 3688622 - 3688573
Alignment:
Q  426 agacccatgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgt 474  Q
    |||||||||||||||||||  |||||| ||| ||||||||||||||||||    
T  3688622 agacccatgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgt 3688573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 15134618 - 15134546
Alignment:
Q  427 gacccatgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    |||||||||||||||||| |||| || ||  |||||||||||||||||| ||||||  ||||||  |||||||    
T  15134618 gacccatgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgttactagcatt 15134546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 42094293 - 42094365
Alignment:
Q  430 ccatgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcct 501  Q
    ||||||||||||||| ||||||| || | ||||||||||| ||||| |||||| |||||||| ||||||||||    
T  42094293 ccatgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcct 42094365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 499
Target Start/End: Complemental strand, 12779550 - 12779480
Alignment:
Q  429 cccatgtgaattttaatcaatcaagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattc 499  Q
    |||||||||||||||| ||||||| |  |||||||||||||||| | ||| || |||||||| ||||||||    
T  12779550 cccatgtgaattttaaccaatcaaaagaatgtgttgaaaaatgtatgttagaaggtgtgttgctagcattc 12779480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 2302104 - 2302034
Alignment:
Q  432 atgtgaattttaatcaatcaagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctc 502  Q
    |||||| |||||| ||||||||||  ||||||||||| | ||| ||||||  | |||||||||||||||||    
T  2302104 atgtgagttttaaccaatcaagaaggtgtgttgaaaagtatgtgttaaaaaatatgttgttagcattcctc 2302034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 18719776 - 18719707
Alignment:
Q  433 tgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctct 503  Q
    |||||||||||| ||||||| || | |||||||||||||||||  || || |||||||| ||||||||||||    
T  18719776 tgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt--tagaatgtgtgttgctagcattcctct 18719707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 509
Target Start/End: Complemental strand, 29955089 - 29955006
Alignment:
Q  427 gacccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctcttaaaat 509  Q
    |||||||||||||||||| ||||||| || | ||||||||||| | ||||||||||  | ||||| |||| |||||||||||||    
T  29955089 gacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgctagctttcctcttaaaat 29955006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 509
Target Start/End: Complemental strand, 30004243 - 30004160
Alignment:
Q  427 gacccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctcttaaaat 509  Q
    |||||||||||||||||| ||||||| || | ||||||||||| | ||||||||||  | ||||| |||| |||||||||||||    
T  30004243 gacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgctagctttcctcttaaaat 30004160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 31205421 - 31205347
Alignment:
Q  426 agacccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattc 499  Q
    |||||||||| |||||||| |||||||  | | ||||||| ||||| ||| ||||||||||||||||||||||||    
T  31205421 agacccatgtaaattttaaccaatcaaagagagtgtgttggaaaatatgtgttaaaacgtgtgttgttagcattc 31205347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 49750650 - 49750581
Alignment:
Q  430 ccatgtgaattttaatcaatc-aagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    ||||||||||||||||||||| ||||  |||||||||||||| ||| ||||||||||  |||||| ||||    
T  49750650 ccatgtgaattttaatcaatcaaagagaatgtgttgaaaaatatgttttaaaacgtgaattgttaacatt 49750581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 3901581 - 3901659
Alignment:
Q  427 gacccatgtgaattttaatcaatc-aagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctta 505  Q
    |||||||||||||||||| ||||| ||||   ||||||||||| ||||| || ||| || ||||||||||||||||||||    
T  3901581 gacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt-aaatgtatgttgttagcattcctctta 3901659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 32881048 - 32880976
Alignment:
Q  427 gacccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    ||||||||||||| |||| |||||||| | | | |||||||||||||||  ||||| ||||||| ||||||||    
T  32881048 gacccatgtgaatattaaccaatcaaggagagtatgttgaaaaatgtgtgataaaatgtgtgttcttagcatt 32880976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 504
Target Start/End: Original strand, 35415091 - 35415135
Alignment:
Q  460 tgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    ||||||||| ||||| |||||| |||||||||||||||| |||||    
T  35415091 tgttgaaaagtgtgtgttaaaatgtgtgttgttagcattactctt 35415135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 498
Target Start/End: Complemental strand, 939380 - 939311
Alignment:
Q  432 atgtgaattttaatcaatcaa---gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    ||||||||||||| |||||||   ||||||||||||||| |||||||||| || || |||||||||||||    
T  939380 atgtgaattttaaccaatcaaagagaatatgtgttgaaatatgtgtattagaatgtatgttgttagcatt 939311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 7444307 - 7444255
Alignment:
Q  451 aagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctct 503  Q
    ||||| |||||||||||||||||| |||||| |||||||| ||||||| ||||    
T  7444307 aagaaaatgtgttgaaaaatgtgtgttaaaatgtgtgttgctagcatttctct 7444255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 498
Target Start/End: Complemental strand, 24181170 - 24181132
Alignment:
Q  460 tgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  24181170 tgttaaaaaatgtgtattaaaatgtgtgttgttagcatt 24181132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 502
Target Start/End: Original strand, 49822619 - 49822692
Alignment:
Q  430 ccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctc 502  Q
    ||||||||||||||| |||||||  | | ||||||||||||||||| ||| ||  ||||||| |||||||||||    
T  49822619 ccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgttgctagcattcctc 49822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 45925184 - 45925240
Alignment:
Q  416 ataatttggt-agacccatgtgaattttaatcaatc-aagaatatgtgttgaaaaat 470  Q
    |||||||||| |||| ||| |||||||||||||||| ||||| ||||||||||||||    
T  45925184 ataatttggtgagactcatatgaattttaatcaatcaaagaaaatgtgttgaaaaat 45925240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 18998156 - 18998202
Alignment:
Q  458 tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||||    
T  18998156 tgtgttgaaaaatgtgtgttaaaatgtgtgtcgttagcattcctctt 18998202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 13772443 - 13772375
Alignment:
Q  432 atgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattc 499  Q
    ||||||||||||||||||||| || | ||| ||||||||||| | ||||||  ||||||||||||||||    
T  13772443 atgtgaattttaatcaatcaaaaaaaatgtattgaaaaatgtatgttaaaatatgtgttgttagcattc 13772375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 23848313 - 23848240
Alignment:
Q  429 cccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctct 503  Q
    ||||| ||||||||||||||||||  ||| ||||||||||| |||||  ||||| |||||||||||||||| ||||    
T  23848313 cccatatgaattttaatcaatcaaagatagtgtgttgaaaagtgtgt--taaaatgtgtgttgttagcatttctct 23848240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 8402596 - 8402642
Alignment:
Q  458 tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    ||||||||||| ||||| |||||| |||||||| |||||||||||||    
T  8402596 tgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcctctt 8402642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 504
Target Start/End: Original strand, 17893438 - 17893482
Alignment:
Q  460 tgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||    
T  17893438 tgttgaaaaatgtgtgttaaaatgtgtgttgttatcatttctctt 17893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 40694632 - 40694592
Alignment:
Q  458 tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    ||||||| ||||||||| ||||||||||||||| |||||||    
T  40694632 tgtgttgtaaaatgtgtgttaaaacgtgtgttgctagcatt 40694592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 40696308 - 40696348
Alignment:
Q  458 tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    ||||||| ||||||||| ||||||||||||||| |||||||    
T  40696308 tgtgttgcaaaatgtgtgttaaaacgtgtgttgctagcatt 40696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 22026111 - 22026149
Alignment:
Q  460 tgttgaaaaatgtgtattaaaacgtgtgttgttagcatt 498  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  22026111 tgttgaaaaatgtgtgttaaaacgtgtgttgttagcatt 22026149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 26647783 - 26647856
Alignment:
Q  432 atgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    ||||||||| ||| ||||||| |||| ||||||||||| ||||||||| || || ||||| |||||||||||||    
T  26647783 atgtgaattctaaccaatcaaaaatagtgtgttgaaaagtgtgtattagaatgtatgttgctagcattcctctt 26647856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 5443606 - 5443690
Alignment:
Q  416 ataatttggtagacccatgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattc 499  Q
    |||||||||| || | ||||||||||||| ||||||| |||  | ||||||||||||||| ||| || |||||||| ||||||||    
T  5443606 ataatttggtggagctatgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgctagcattc 5443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 24516646 - 24516704
Alignment:
Q  429 cccatgtgaattttaatcaatcaagaatatgtgttgaaaaatgtgtattaaaacgtgtgt 488  Q
    |||||||||||||||||||||||| || | ||||||||||| |||| |||||| ||||||    
T  24516646 cccatgtgaattttaatcaatcaa-aaaaagtgttgaaaaaagtgtgttaaaatgtgtgt 24516704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 504
Target Start/End: Original strand, 26863001 - 26863079
Alignment:
Q  427 gacccatgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctt 504  Q
    |||||||||||||||||| |||| ||  | | | || |||||| |||||||||||| |||||||| |||||||||||||    
T  26863001 gacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgttgctagcattcctctt 26863079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 40134474 - 40134551
Alignment:
Q  427 gacccatgtgaattttaatcaatcaagaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctctta 505  Q
    |||||||||||||||||| |||||| ||   ||||||| ||| ||||| |||||| ||| |||| ||||||||||||||    
T  40134474 gacccatgtgaattttaaccaatca-gagagtgtgttggaaagtgtgtgttaaaatgtgggttgctagcattcctctta 40134551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 499
Target Start/End: Original strand, 5452667 - 5452735
Alignment:
Q  432 atgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattc 499  Q
    ||||||||||||| ||||||| |||  | ||||||||||||||| ||| || |||||||| ||||||||    
T  5452667 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgctagcattc 5452735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 47497792 - 47497856
Alignment:
Q  431 catgtgaattttaatcaatcaa-gaatatgtgttgaaaaatgtgtattaaaacgtgtgttgttag 494  Q
    |||||||||||||| ||||||| ||| || | ||||||||||||| ||| || ||||||||||||    
T  47497792 catgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaatgtgtgttgttag 47497856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 136413 - 136486
Alignment:
Q  431 catgtgaattttaatcaatcaagaata-tgtgttgaaaaatgtgtattaaaacgtgtgttgttagcattcctct 503  Q
    ||||||| |||||| ||||||| || | ||||||||||||||||| |||||| |||| ||| ||||||||||||    
T  136413 catgtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgtattgctagcattcctct 136486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University