View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706-Insertion-9 (Length: 214)

Name: NF1706-Insertion-9
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706-Insertion-9
NF1706-Insertion-9
[»] chr8 (15 HSPs)
chr8 (63-214)||(10441126-10441277)
chr8 (95-132)||(34201063-34201100)
chr8 (95-127)||(29198496-29198528)
chr8 (95-130)||(7616866-7616901)
chr8 (95-132)||(1639495-1639532)
chr8 (94-127)||(14740740-14740773)
chr8 (95-127)||(3508062-3508094)
chr8 (98-126)||(3520105-3520133)
chr8 (95-127)||(12985402-12985434)
chr8 (95-123)||(31119101-31119129)
chr8 (95-127)||(31236594-31236626)
chr8 (95-179)||(33049123-33049206)
chr8 (95-127)||(37225760-37225792)
chr8 (95-127)||(40063961-40063993)
chr8 (95-123)||(42874536-42874564)
[»] chr6 (17 HSPs)
chr6 (95-131)||(9024193-9024229)
chr6 (96-127)||(2140499-2140530)
chr6 (95-126)||(10157995-10158026)
chr6 (94-127)||(6299522-6299555)
chr6 (94-127)||(6306332-6306365)
chr6 (95-132)||(29049890-29049927)
chr6 (94-123)||(29959189-29959218)
chr6 (95-127)||(4859130-4859162)
chr6 (95-123)||(6751899-6751927)
chr6 (95-127)||(8148130-8148162)
chr6 (95-127)||(9617444-9617476)
chr6 (95-127)||(9629393-9629425)
chr6 (95-123)||(10031584-10031612)
chr6 (95-123)||(19369831-19369859)
chr6 (95-127)||(30866161-30866193)
chr6 (95-127)||(33076418-33076450)
chr6 (95-127)||(34446575-34446607)
[»] chr4 (20 HSPs)
chr4 (95-130)||(26276026-26276061)
chr4 (95-127)||(5654608-5654640)
chr4 (95-127)||(10546158-10546190)
chr4 (95-127)||(18513258-18513290)
chr4 (95-129)||(2234258-2234292)
chr4 (95-125)||(34589723-34589753)
chr4 (95-127)||(2976704-2976736)
chr4 (95-127)||(8457935-8457967)
chr4 (95-127)||(11110213-11110245)
chr4 (95-123)||(13307891-13307919)
chr4 (95-127)||(14465311-14465343)
chr4 (95-127)||(19230326-19230358)
chr4 (95-127)||(20743295-20743327)
chr4 (95-127)||(31243565-31243597)
chr4 (95-127)||(32910561-32910593)
chr4 (95-123)||(37496718-37496746)
chr4 (99-127)||(43188622-43188650)
chr4 (95-127)||(43299988-43300020)
chr4 (95-127)||(43300626-43300658)
chr4 (95-127)||(44796979-44797011)
[»] chr7 (12 HSPs)
chr7 (95-127)||(38134423-38134455)
chr7 (95-127)||(44172907-44172939)
chr7 (95-130)||(7133295-7133330)
chr7 (95-132)||(7241011-7241048)
chr7 (95-148)||(20427652-20427705)
chr7 (95-123)||(2143870-2143898)
chr7 (95-123)||(2144556-2144584)
chr7 (95-123)||(5937438-5937466)
chr7 (95-127)||(19930958-19930990)
chr7 (95-127)||(21247753-21247785)
chr7 (95-127)||(30516374-30516406)
chr7 (95-127)||(36314644-36314676)
[»] chr5 (10 HSPs)
chr5 (95-127)||(11596472-11596504)
chr5 (95-126)||(43208291-43208322)
chr5 (97-127)||(28296338-28296368)
chr5 (95-125)||(41558671-41558701)
chr5 (95-127)||(2039866-2039898)
chr5 (95-127)||(18607114-18607146)
chr5 (95-123)||(30080518-30080546)
chr5 (95-127)||(30098336-30098368)
chr5 (95-127)||(31264448-31264480)
chr5 (95-127)||(38749580-38749612)
[»] chr2 (9 HSPs)
chr2 (95-127)||(18570982-18571014)
chr2 (95-127)||(40681992-40682024)
chr2 (96-127)||(30563419-30563450)
chr2 (94-127)||(19613629-19613662)
chr2 (95-127)||(10535776-10535808)
chr2 (95-127)||(12933753-12933785)
chr2 (95-127)||(31026705-31026737)
chr2 (95-123)||(43586022-43586050)
chr2 (95-127)||(44605156-44605188)
[»] chr1 (11 HSPs)
chr1 (95-131)||(2445876-2445912)
chr1 (95-127)||(3921677-3921709)
chr1 (95-127)||(11571595-11571627)
chr1 (95-127)||(40747790-40747822)
chr1 (95-125)||(14332420-14332450)
chr1 (95-127)||(2471230-2471262)
chr1 (95-127)||(6427360-6427392)
chr1 (95-123)||(18946051-18946079)
chr1 (95-127)||(29230075-29230107)
chr1 (95-127)||(30847737-30847769)
chr1 (95-127)||(41017421-41017453)
[»] chr3 (11 HSPs)
chr3 (93-127)||(32166198-32166232)
chr3 (95-125)||(40017386-40017416)
chr3 (99-127)||(9210846-9210874)
chr3 (95-127)||(9624651-9624683)
chr3 (95-127)||(12704674-12704706)
chr3 (95-127)||(20691329-20691361)
chr3 (95-127)||(21110480-21110512)
chr3 (95-127)||(21149077-21149109)
chr3 (95-127)||(40150588-40150620)
chr3 (95-127)||(41319327-41319359)
chr3 (95-127)||(52369785-52369817)
[»] scaffold0571 (1 HSPs)
scaffold0571 (99-127)||(7700-7728)
[»] scaffold0037 (1 HSPs)
scaffold0037 (95-127)||(102915-102947)
[»] scaffold0007 (1 HSPs)
scaffold0007 (95-127)||(225285-225317)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 10441277 - 10441126
Alignment:
Q  63 gtgtctgacacctattagtgtcctacacggacattacattgaattatgtcattttctcaaattatcattacttgtcggtgtcgtgtttggtggccgtgtc 162  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  10441277 gtgtctgacacgtatcagtgtcctacacggacattacattgaattatgtcattttctcaaattatcattacttgtcagtgtcgtgtttgatggccgtgtc 10441178  T
Q  163 tgcattcgtgcttcataggttgttagtatattgttatatgggagggggaaat 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10441177 tgcattcgtgcttcataggttgttagtatattgttatacgggagggggaaat 10441126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 34201063 - 34201100
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcatta 132  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34201063 attacattgaattatgtcattttctcaaattattatta 34201100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 29198496 - 29198528
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  29198496 attacattgaattatgtcattttctcaaattat 29198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 7616866 - 7616901
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcat 130  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7616866 attacattgaattgtgtcattttctcaaattatcat 7616901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 1639532 - 1639495
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcatta 132  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  1639532 attacattgaattatgtcattttctcaaaatattatta 1639495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 14740773 - 14740740
Alignment:
Q  94 cattacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||| |||||    
T  14740773 cattacattgaattatgtcattttctcacattat 14740740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 3508094 - 3508062
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  3508094 attacattgaattatgttattttctcaaattat 3508062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 3520105 - 3520133
Alignment:
Q  98 acattgaattatgtcattttctcaaatta 126  Q
    |||||||||||||||||||||||||||||    
T  3520105 acattgaattatgtcattttctcaaatta 3520133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 12985434 - 12985402
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  12985434 attacattgaattatgtgattttctcaaattat 12985402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 31119129 - 31119101
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  31119129 attacattgaattatgtcattttctcaaa 31119101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 31236594 - 31236626
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  31236594 attacattgaattatgtgattttctcaaattat 31236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 33049123 - 33049206
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcattacttgtcggtgtcgtgtttggtggccgtgtctgcattcgtgcttcata 179  Q
    |||||||| |||||||||||||| |||| |||||||||  |||| ||||||| ||||||| ||| ||| |  || ||||||||||    
T  33049123 attacattcaattatgtcattttttcaagttatcatta-gtgtcagtgtcgtatttggtgtccgcgtcagtgttggtgcttcata 33049206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 37225760 - 37225792
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  37225760 attacattgaattatgttattttctcaaattat 37225792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 40063993 - 40063961
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  40063993 attacaatgaattatgtcattttctcaaattat 40063961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 42874564 - 42874536
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  42874564 attacattgaattatgtcattttctcaaa 42874536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 9024193 - 9024229
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcatt 131  Q
    |||||||||||||||||||||||||||||||||||||    
T  9024193 attacattgaattatgtcattttctcaaattatcatt 9024229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 127
Target Start/End: Original strand, 2140499 - 2140530
Alignment:
Q  96 ttacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||||||||||||    
T  2140499 ttacattgaattatgtcattttctcaaattat 2140530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 10158026 - 10157995
Alignment:
Q  95 attacattgaattatgtcattttctcaaatta 126  Q
    ||||||||||||||||||||||||||||||||    
T  10158026 attacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 6299555 - 6299522
Alignment:
Q  94 cattacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||| |||||||||||||||||    
T  6299555 cattacattgaattatatcattttctcaaattat 6299522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 6306365 - 6306332
Alignment:
Q  94 cattacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||| |||||||||||||||||    
T  6306365 cattacattgaattatatcattttctcaaattat 6306332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 29049927 - 29049890
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcatta 132  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  29049927 attacattgaattatgtaattttctcaaattattatta 29049890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 29959218 - 29959189
Alignment:
Q  94 cattacattgaattatgtcattttctcaaa 123  Q
    ||||||||||||||||||||||||||||||    
T  29959218 cattacattgaattatgtcattttctcaaa 29959189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 4859130 - 4859162
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||| |||||||||||||||||||||||    
T  4859130 attacattggattatgtcattttctcaaattat 4859162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 6751899 - 6751927
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  6751899 attacattgaattatgtcattttctcaaa 6751927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 8148162 - 8148130
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  8148162 attacattcaattatgtcattttctcaaattat 8148130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 9617476 - 9617444
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  9617476 attacattgaattatgtgattttctcaaattat 9617444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 9629425 - 9629393
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  9629425 attacattgaattatgtgattttctcaaattat 9629393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 10031612 - 10031584
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  10031612 attacattgaattatgtcattttctcaaa 10031584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 19369859 - 19369831
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  19369859 attacattgaattatgtcattttctcaaa 19369831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 30866161 - 30866193
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  30866161 attacattgaattatgtgattttctcaaattat 30866193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 33076450 - 33076418
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  33076450 attacattcaattatgtcattttctcaaattat 33076418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 34446607 - 34446575
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  34446607 attacactgaattatgtcattttctcaaattat 34446575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 26276026 - 26276061
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcat 130  Q
    ||||||||||||||||||||||||||||||||||||    
T  26276026 attacattgaattatgtcattttctcaaattatcat 26276061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 5654608 - 5654640
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  5654608 attacattgaattatgtcattttctcaaattat 5654640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 10546190 - 10546158
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaattat 10546158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 18513258 - 18513290
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  18513258 attacattgaattatgtcattttctcaaattat 18513290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 2234292 - 2234258
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatca 129  Q
    ||||||||||||||||| |||||||||||||||||    
T  2234292 attacattgaattatgtgattttctcaaattatca 2234258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 34589723 - 34589753
Alignment:
Q  95 attacattgaattatgtcattttctcaaatt 125  Q
    |||||||||||||||||||||||||||||||    
T  34589723 attacattgaattatgtcattttctcaaatt 34589753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 2976736 - 2976704
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  2976736 attacattcaattatgtcattttctcaaattat 2976704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 8457967 - 8457935
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  8457967 attacattcaattatgtcattttctcaaattat 8457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 11110245 - 11110213
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||| |||||||||||||||||||||||||    
T  11110245 attacatcgaattatgtcattttctcaaattat 11110213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 13307919 - 13307891
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  13307919 attacattgaattatgtcattttctcaaa 13307891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 14465311 - 14465343
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||| ||||||||||||||||||||||||||||    
T  14465311 attaaattgaattatgtcattttctcaaattat 14465343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 19230326 - 19230358
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  19230326 attacattgaattatgttattttctcaaattat 19230358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 20743295 - 20743327
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  20743295 attacactgaattatgtcattttctcaaattat 20743327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 31243565 - 31243597
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  31243565 attacactgaattatgtcattttctcaaattat 31243597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 32910593 - 32910561
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  32910593 attacactgaattatgtcattttctcaaattat 32910561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 37496746 - 37496718
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  37496746 attacattgaattatgtcattttctcaaa 37496718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 43188650 - 43188622
Alignment:
Q  99 cattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||    
T  43188650 cattgaattatgtcattttctcaaattat 43188622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 43299988 - 43300020
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  43299988 attacattgaattatgtaattttctcaaattat 43300020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 43300658 - 43300626
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  43300658 attacattgaattatgtaattttctcaaattat 43300626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 44796979 - 44797011
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  44796979 attacattgaattatgttattttctcaaattat 44797011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 38134423 - 38134455
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  38134423 attacattgaattatgtcattttctcaaattat 38134455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 44172907 - 44172939
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  44172907 attacattgaattatgtcattttctcaaattat 44172939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 7133295 - 7133330
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcat 130  Q
    |||||| |||||||||||||||||||||||||||||    
T  7133295 attacactgaattatgtcattttctcaaattatcat 7133330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 7241011 - 7241048
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcatta 132  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7241011 attacattgaattatgtcattttttcaaatcatcatta 7241048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 20427652 - 20427705
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcattacttgtcggtgtcgtgt 148  Q
    |||||||| || |||||||| |||||||||||| || ||||||| |||||||||    
T  20427652 attacatttaaatatgtcatcttctcaaattattatcacttgtctgtgtcgtgt 20427705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 2143870 - 2143898
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  2143870 attacattgaattatgtcattttctcaaa 2143898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 2144556 - 2144584
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  2144556 attacattgaattatgtcattttctcaaa 2144584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 5937438 - 5937466
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  5937438 attacattgaattatgtcattttctcaaa 5937466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 19930958 - 19930990
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||| |||||||||    
T  19930958 attacattgaattatgtcattttatcaaattat 19930990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 21247753 - 21247785
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||| ||||||||||||||||||    
T  21247753 attacattgaattacgtcattttctcaaattat 21247785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 30516374 - 30516406
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||| |||||||||||||||||    
T  30516374 attacattgaattatatcattttctcaaattat 30516406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 36314644 - 36314676
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||| |||||||||||||||||||||    
T  36314644 attacattgaaatatgtcattttctcaaattat 36314676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 11596472 - 11596504
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  11596472 attacattgaattatgtcattttctcaaattat 11596504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 43208291 - 43208322
Alignment:
Q  95 attacattgaattatgtcattttctcaaatta 126  Q
    ||||||||||||||||||||||||||||||||    
T  43208291 attacattgaattatgtcattttctcaaatta 43208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 28296368 - 28296338
Alignment:
Q  97 tacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||    
T  28296368 tacattgaattatgtcattttctcaaattat 28296338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 41558671 - 41558701
Alignment:
Q  95 attacattgaattatgtcattttctcaaatt 125  Q
    |||||||||||||||||||||||||||||||    
T  41558671 attacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 2039866 - 2039898
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||| ||||||||||||||||||||    
T  2039866 attacattgaatcatgtcattttctcaaattat 2039898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 18607114 - 18607146
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  18607114 attacattgaattatgttattttctcaaattat 18607146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 30080518 - 30080546
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  30080518 attacattgaattatgtcattttctcaaa 30080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 30098368 - 30098336
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  30098368 attacattgaattatgtgattttctcaaattat 30098336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 31264480 - 31264448
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  31264480 attacactgaattatgtcattttctcaaattat 31264448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 38749580 - 38749612
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||| |||||||||    
T  38749580 attacattgaattatgtcattttttcaaattat 38749612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 18571014 - 18570982
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  18571014 attacattgaattatgtcattttctcaaattat 18570982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 40682024 - 40681992
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattat 40681992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 127
Target Start/End: Complemental strand, 30563450 - 30563419
Alignment:
Q  96 ttacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||||||||||||    
T  30563450 ttacattgaattatgtcattttctcaaattat 30563419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 19613629 - 19613662
Alignment:
Q  94 cattacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||| |||||||||||||||    
T  19613629 cattacattgaattatgttattttctcaaattat 19613662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 10535776 - 10535808
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  10535776 attacactgaattatgtcattttctcaaattat 10535808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 12933753 - 12933785
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||||| |||||||    
T  12933753 attacattgaattatgtcattttcttaaattat 12933785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 31026737 - 31026705
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||||| |||||||    
T  31026737 attacattgaattatgtcattttcttaaattat 31026705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 43586022 - 43586050
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  43586022 attacattgaattatgtcattttctcaaa 43586050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 44605156 - 44605188
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  44605156 attacattgaattatgttattttctcaaattat 44605188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 2445912 - 2445876
Alignment:
Q  95 attacattgaattatgtcattttctcaaattatcatt 131  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2445912 attaaattgaattatgtcattttctcaaattatcatt 2445876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 3921709 - 3921677
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  3921709 attacattgaattatgtcattttctcaaattat 3921677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 11571627 - 11571595
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaattat 11571595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 40747790 - 40747822
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||||||    
T  40747790 attacattgaattatgtcattttctcaaattat 40747822  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 14332450 - 14332420
Alignment:
Q  95 attacattgaattatgtcattttctcaaatt 125  Q
    |||||||||||||||||||||||||||||||    
T  14332450 attacattgaattatgtcattttctcaaatt 14332420  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 2471230 - 2471262
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||| |||||||||||||||||    
T  2471230 attacattgaattatctcattttctcaaattat 2471262  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 6427392 - 6427360
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  6427392 attacattgaattatgtgattttctcaaattat 6427360  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 18946051 - 18946079
Alignment:
Q  95 attacattgaattatgtcattttctcaaa 123  Q
    |||||||||||||||||||||||||||||    
T  18946051 attacattgaattatgtcattttctcaaa 18946079  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 29230107 - 29230075
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  29230107 attacattcaattatgtcattttctcaaattat 29230075  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 30847737 - 30847769
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||| |||||||||    
T  30847737 attacattgaattatgtcattttttcaaattat 30847769  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 41017421 - 41017453
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  41017421 attacattaaattatgtcattttctcaaattat 41017453  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 32166198 - 32166232
Alignment:
Q  93 acattacattgaattatgtcattttctcaaattat 127  Q
    |||||||||| ||||||||||||||||||||||||    
T  32166198 acattacattcaattatgtcattttctcaaattat 32166232  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 40017386 - 40017416
Alignment:
Q  95 attacattgaattatgtcattttctcaaatt 125  Q
    |||||||||||||||||||||||||||||||    
T  40017386 attacattgaattatgtcattttctcaaatt 40017416  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 9210846 - 9210874
Alignment:
Q  99 cattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattat 9210874  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 9624683 - 9624651
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  9624683 attacattgaattatgtgattttctcaaattat 9624651  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 12704674 - 12704706
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||| |||||||||    
T  12704674 attacattgaattatgtcattttttcaaattat 12704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 20691361 - 20691329
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  20691361 attacactgaattatgtcattttctcaaattat 20691329  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 21110480 - 21110512
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||||| ||||||||||||||||||||||||    
T  21110480 attacattcaattatgtcattttctcaaattat 21110512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 21149109 - 21149077
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    |||||| ||||||||||||||||||||||||||    
T  21149109 attacactgaattatgtcattttctcaaattat 21149077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 40150588 - 40150620
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||| |||||||||||||||||    
T  40150588 attacattgaattatatcattttctcaaattat 40150620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 41319327 - 41319359
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||||||||| |||||||||    
T  41319327 attacattgaattatgtcattttttcaaattat 41319359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 52369817 - 52369785
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||||| |||||||||||||||    
T  52369817 attacattgaattatgtaattttctcaaattat 52369785  T

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Target: scaffold0571 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 7728 - 7700
Alignment:
Q  99 cattgaattatgtcattttctcaaattat 127  Q
    |||||||||||||||||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattat 7700  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 102947 - 102915
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||||||||| |||||||||||||||||    
T  102947 attacattgaattatatcattttctcaaattat 102915  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 225285 - 225317
Alignment:
Q  95 attacattgaattatgtcattttctcaaattat 127  Q
    ||||||||| |||||||||||||||||||||||    
T  225285 attacattgtattatgtcattttctcaaattat 225317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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