View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_high_16 (Length: 240)
Name: NF17060_high_16
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 3303600 - 3303822
Alignment:
| Q |
15 |
caagtccagcttcttcaacttgaaccaagttgtcttcacttcgagtatccaatcatccagttgaagtatgtatttggatctttctacactaagtgacaaa |
114 |
Q |
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| T |
3303600 |
caagtccagcttcttcaacttgaaccaagttgtcttcacttcgagtatccaatcatccaattgaagtatgtatttggatctttctccactaagtgacaaa |
3303699 |
T |
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| Q |
115 |
ccaatcaccgtctaacgaaatatcattcacattatactcatttgcttccctaatttgtttcttcttggccaactagccatcacaaatacagaatcattct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303700 |
ccaatcaccgtctaacgaaatatcattcacattatactcatttgcttccctaatttgtttcttcttggccaactagccatcacaaatacagaatcattct |
3303799 |
T |
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| Q |
215 |
tcttttgttctaaacagtttctt |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
3303800 |
tcttttgttctaaacagtttctt |
3303822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 3291788 - 3291933
Alignment:
| Q |
92 |
atctttctacactaagtgacaaaccaatcaccgtctaacgaaatatcattcacattatactcatttgcttccctaatttgtttcttcttggccaactagc |
191 |
Q |
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|||||||| ||||||| ||| || ||||| | |||||||||||||||||||| |||||| |||||||| || ||| ||||| |||||||| |||| |
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| T |
3291788 |
atctttctcaactaagtcacagactaatcatcacctaacgaaatatcattcacaatatactaatttgcttttgcaacttgcttctttttggccaattagc |
3291887 |
T |
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| Q |
192 |
catcacaaatacagaatcattcttcttttgttctaaacagtttctt |
237 |
Q |
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|| |||||||||| ||||||||| ||||||| ||||||||||||| |
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| T |
3291888 |
caccacaaatacaacatcattcttattttgttttaaacagtttctt |
3291933 |
T |
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