View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_high_18 (Length: 234)
Name: NF17060_high_18
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 42450173 - 42450381
Alignment:
| Q |
20 |
aataggctaacaaccaaagctattaggtctggtt---------ttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttcca |
110 |
Q |
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| T |
42450173 |
aataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaagcttttatcggtgctatcttcaagtcgttgaattgcatcttcca |
42450272 |
T |
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| Q |
111 |
catcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgctt |
210 |
Q |
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| T |
42450273 |
catcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgctt |
42450372 |
T |
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| Q |
211 |
cagcctttg |
219 |
Q |
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||||||||| |
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| T |
42450373 |
cagcctttg |
42450381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 742969 - 743133
Alignment:
| Q |
55 |
tgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctata |
154 |
Q |
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| T |
742969 |
tgtcaacattaagctctcatcagtgctatctccaagcagctgaattgcatcttccacgtcatcaatcgcaccatatcgtagacttgcagctctttctata |
743068 |
T |
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| Q |
155 |
tcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttg |
219 |
Q |
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| T |
743069 |
tcatgccgcctctcagcctcctgtagagacaagataagctcttcgcttttcagcttcagcctttg |
743133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 45467616 - 45467496
Alignment:
| Q |
97 |
aattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctct |
196 |
Q |
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||||||| |||||| || ||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||| | |||| |||||| |
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| T |
45467616 |
aattgcagtttccacctcttcaattgcaccatatcgcaggtccgcagctcttgctagatcataccgcctctctgcctcctgtagtgcaaagaggagctct |
45467517 |
T |
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| Q |
197 |
tcacgtttctgcttcagcctt |
217 |
Q |
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| T |
45467516 |
tcacgtttctgcttcagcctt |
45467496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 10045762 - 10045647
Alignment:
| Q |
98 |
attgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctctt |
197 |
Q |
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||||||| |||||| || ||||| ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||||| | |||| ||||||| |
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| T |
10045762 |
attgcattttccacctcttcaattgcaccatatcgtaggtctgcagctctggctagatcataccgcctctcagcctcttgtagtgcaaagaggagctctt |
10045663 |
T |
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| Q |
198 |
cacgtttctgcttcag |
213 |
Q |
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|||||||||| ||||| |
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| T |
10045662 |
cacgtttctgtttcag |
10045647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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