View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_high_5 (Length: 425)
Name: NF17060_high_5
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_high_5 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 21810 - 22216
Alignment:
| Q |
1 |
ttaattcttctatgataataataacctggaacaacagtactacacttatatgcatgaagtgtgtatgaaacagtgccaagcacctacagtaaatttgttt |
100 |
Q |
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|||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21810 |
ttaattcttctatgttaataataacattgaacaacagtactacacttatatgcatgaagtgtgtatgaaacagtgccaagcacctacagtaaatttgttt |
21909 |
T |
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| Q |
101 |
acttccaagtcatataactgttctttcactataatttgttcttccaatttccaaagatatggagagtatataaggaaatagaagaaatgctgaaatcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21910 |
acttccaagtcatataactgttctttcactataatttgttcttccaatttccaaagatatggagagtatataaggaaatagaagaaatgctgaaatcata |
22009 |
T |
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| Q |
201 |
tgtaggaagatgttgatatgctaacaggttggctagtgatggtattaggaacaattttattgagaggttgtttatggggagagggcaatctggtagtcgt |
300 |
Q |
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| T |
22010 |
tgtaggaagaggttgatatgctaacaggttggctagtgatggtattaggaacaattttattgagaggttgtttatggggagagggcaatctggtagtcgt |
22109 |
T |
|
| Q |
301 |
aggaatatctcacatctttgggaactgagagatagtttcttttattcaatctgaacattttgtgacttgcatatttcctccagacaaagcatgtgttgtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22110 |
aggaatatctcacatctttgggaactgagagatagtttcttttattcaatctgcacattttgtgacttgcatatttcctccagacaaagcatgtgttgtg |
22209 |
T |
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| Q |
401 |
gttacaa |
407 |
Q |
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| T |
22210 |
gttacaa |
22216 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 28396446 - 28396547
Alignment:
| Q |
30 |
aacaacagtactacacttatatgcatgaagtgtgtatgaaacagtgccaagcacctacagtaaatttgtttacttccaagtcatataactgttctttcac |
129 |
Q |
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|||||||||||| ||| | |||||||||||||| || | | | ||||| || | |||| |||||||||| | ||| || |||||||||||||||||||| |
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| T |
28396446 |
aacaacagtactgcacctctatgcatgaagtgtataagcatctgtgcctagtgcgtacaataaatttgttcaattc-aattcatataactgttctttcac |
28396544 |
T |
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| Q |
130 |
tat |
132 |
Q |
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||| |
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| T |
28396545 |
tat |
28396547 |
T |
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