View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17060_low_1 (Length: 498)

Name: NF17060_low_1
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17060_low_1
NF17060_low_1
[»] chr7 (4 HSPs)
chr7 (26-480)||(39363609-39364063)
chr7 (238-456)||(3006979-3007198)
chr7 (233-399)||(29442788-29442951)
chr7 (106-182)||(29443014-29443090)
[»] chr3 (4 HSPs)
chr3 (106-475)||(50057852-50058236)
chr3 (179-475)||(28095198-28095495)
chr3 (184-459)||(46146568-46146847)
chr3 (116-168)||(28095520-28095572)
[»] chr2 (2 HSPs)
chr2 (179-480)||(25475470-25475773)
chr2 (238-462)||(41894345-41894570)
[»] chr8 (1 HSPs)
chr8 (181-307)||(1424755-1424870)
[»] chr1 (2 HSPs)
chr1 (394-462)||(2412090-2412158)
chr1 (116-182)||(2411845-2411911)
[»] chr5 (1 HSPs)
chr5 (75-103)||(1673812-1673840)


Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 26 - 480
Target Start/End: Complemental strand, 39364063 - 39363609
Alignment:
Q  26 taaagggagatattttcttaggaaattggataaaccaacatgcatttctgtacatctctttctccacttccacttggttttgttggattgaatgcttcag 125  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39364063 taaagggagatattttcttagggaattggataaaccaacatgcatttctgtacatctctttctccacttccacttggttttgttggattgaatgcttcag 39363964  T
Q  126 ataaaccatataagcaatattggatactagattcaagagccactaaccacatgacacttctccacttattcacattgtcttatcaacaagaaaacatcca 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39363963 ataaaccatataagcaatattggatactagattcaagagccactaaccacatgacacttctccacttattcacattgtcttatcaacaagaaaacatcca 39363864  T
Q  226 caacaattggttcccttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttcatattctaaaactgtccgc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  39363863 caacaattggttcccttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttcatattctaaaactgcccac 39363764  T
Q  326 tagcctaatttccgcacaaaaactcacaaagagctatcatgtaatgttgttttctacaacaatgcctatgttttccaggacaaggattcggggaggacgg 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39363763 tagcctaatttccgcacaaaaactcacaaagagctatcatgtaatgttgttttctacaacaatgcctatgttttccaggacaaggattcggggaggacgg 39363664  T
Q  426 ttggaaatgctagagaatggaatggtctttattattttcaaaaccagaatttcct 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39363663 ttggaaatgctagagaatggaatggtctttattattttcaaaaccagaatttcct 39363609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 456
Target Start/End: Original strand, 3006979 - 3007198
Alignment:
Q  238 cccttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttcatattctaaaactgtccgctagcctaatttc 337  Q
    |||||||||||||||||||| || |  |||||||| | |  ||||  || | |||| | || ||| ||||||| | |||| ||||| ||||||| |||||    
T  3006979 cccttataactgtagcaggtcaatgggatgtccaacttaatccattcatgaccctaaataatgtccttcatatcccaaaattgtccactagcctgatttc 3007078  T
Q  338 cgcacaaaaactcacaaa-gagctatcatgtaatgttgttttctacaacaatgcctatgttttccaggacaaggattcggggaggacggttggaaatgct 436  Q
       ||||||||||||||| || ||||||||||||||| ||||  | || ||  | | |||||| |||||||| || ||||||||||||  ||||||||||    
T  3007079 aatacaaaaactcacaaaagacctatcatgtaatgttattttgaataataaatcttgtgtttttcaggacaaagaatcggggaggacgactggaaatgct 3007178  T
Q  437 agagaatggaatggtcttta 456  Q
    ||||||||||||||||||||    
T  3007179 agagaatggaatggtcttta 3007198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 399
Target Start/End: Complemental strand, 29442951 - 29442788
Alignment:
Q  233 tggttcccttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttcatattctaaaactgtccgctagccta 332  Q
    ||||||||||| || |||||||| | |||||||| ||||||||| | || ||||| |||||||||| ||| || ||||||  ||| ||||  ||||||||    
T  29442951 tggttcccttaaaattgtagcagattaaggaaatttccaaataaacacaactatagtcctacaaaatgtcctttatattcgcaaaatgtcaactagccta 29442852  T
Q  333 atttccgcacaaaaactcac-aaagagctatcatgtaatgttgttttctacaacaatgcctatgtttt 399  Q
    |||||     | |||||||| ||||| ||||||||||||||||||||  | |||||||| | ||||||    
T  29442851 atttc----tataaactcacaaaagacctatcatgtaatgttgtttttcataacaatgcttttgtttt 29442788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 29443090 - 29443014
Alignment:
Q  106 tgttggattgaatgcttcagataaaccatataagcaatattggatactagattcaagagccactaaccacatgacac 182  Q
    ||||||||| ||||||| | ||||||||| |||  ||||||| ||||||||||  ||||||||| ||||||||||||    
T  29443090 tgttggatttaatgctttatataaaccatctaactaatattgcatactagattttagagccactcaccacatgacac 29443014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 106 - 475
Target Start/End: Original strand, 50057852 - 50058236
Alignment:
Q  106 tgttggattgaatgcttcagataaaccatataagcaatattggatactagattcaagagccactaaccacatgacac--------------ttctccact 191  Q
    ||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||              || ||||||    
T  50057852 tgttggatttaatgcttcggataaaccatctaaccaatattggatactagattctggagccactaaccacatgacacccctacacacacacttttccact 50057951  T
Q  192 tattcacattgtcttatcaacaagaaaacatccacaacaattggttcccttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcc 291  Q
    ||||||| ||||| || ||||||||||| ||||| | ||  | |||||||| |||| ||||| |||  |||||||||||||||||||||| |||||||||    
T  50057952 tattcaccttgtcctagcaacaagaaaatatccatagcagatagttcccttctaaccgtagcgggtcgaggaaatgtccaaataagcccaactataatcc 50058051  T
Q  292 tacaaaacgtctttcatattctaaaactgtccgctagcctaatttccgcacaaaaactcac-aaagagctatcatgtaatgttgttttctacaacaatgc 390  Q
    || |||| ||| |||||||||  ||| ||||| |||||||||||||     |||||||||| ||||| |||||||||||||||||||| |   |||||||    
T  50058052 tagaaaatgtccttcatattcccaaattgtccactagcctaatttctattaaaaaactcacaaaagacctatcatgtaatgttgttttttgtgacaatgc 50058151  T
Q  391 ctatgttttccaggacaaggattcggggaggacggttggaaatgctagagaatggaatggtctttattattttcaaaaccagaat 475  Q
     | |||||| ||||||||||||||||||| |||  ||||||||| |||||||||| ||||||||||||||||| | |||||||||    
T  50058152 ttgtgtttttcaggacaaggattcggggaagacaattggaaatggtagagaatggtatggtctttattattttgataaccagaat 50058236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 179 - 475
Target Start/End: Complemental strand, 28095495 - 28095198
Alignment:
Q  179 acacttctccacttattcacattgtcttatcaacaagaaaacatccacaacaattggttcccttataactgtagcaggtaaaggaaatgtccaaataagc 278  Q
    |||||| | ||||||||||| || || || ||||||||||| |||| |||||   ||||||||||||||| ||   |||  |||||||||||| ||||||    
T  28095495 acacttttacacttattcaccttatcctagcaacaagaaaatatccccaacagaaggttcccttataactataatgggtctaggaaatgtccagataagc 28095396  T
Q  279 ccatctataatcctacaaaacgtctttcatattctaaaactgtccgctagcctaatttccgcacaaaaactcacaaa-gagctatcatgtaatgttgttt 377  Q
    ||| ||||||||||||||||  || |||||||||  ||| || || ||||||||||||||  ||||||||||||||| || |||||||||||||||||||    
T  28095395 ccaactataatcctacaaaatatccttcatattcccaaattgcccactagcctaatttccatacaaaaactcacaaaagacctatcatgtaatgttgttt 28095296  T
Q  378 tctacaacaatgcctatgttttccaggacaaggattcggggaggacggttggaaatgctagagaatggaatggtctttattattttcaaaaccagaat 475  Q
    | |   ||||||| | |||||| || || |||||||  ||||||||| || ||||||||| ||||||||||| ||||||||||||| | |||||||||    
T  28095295 tttgtgacaatgcttgtgtttttcaagaaaaggattatgggaggacgatttgaaatgctatagaatggaatgatctttattattttgataaccagaat 28095198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 459
Target Start/End: Complemental strand, 46146847 - 46146568
Alignment:
Q  184 tctccacttattcacattgtcttatcaacaagaaaacatccacaacaattggttcccttataactgtagcaggtaaaggaaatgtccaaa-taagcccat 282  Q
    ||||||||||| ||| ||||| || ||||||||||| ||||||||||  |||   |||||||| || | ||||| ||||| | ||  ||| ||||| |||    
T  46146847 tctccacttatacaccttgtcctagcaacaagaaaatatccacaacagatggcatccttataattgaaacaggtcaaggagaggtaaaaaataagctcat 46146748  T
Q  283 ctataatcctacaaaacgtctttcatattctaaaactgtccgctagcctaatttc----cgcacaaaaactcac-aaagagctatcatgtaatgttgttt 377  Q
    | |||| ||||| ||| ||| |||||||||  ||| ||||  |||||||||||      |  |||||||| | | ||||| |||||||||||||| ||||    
T  46146747 ccataaccctaccaaatgtccttcatattcccaaattgtcgactagcctaattaattatcttacaaaaacccgctaaagacctatcatgtaatgtcgttt 46146648  T
Q  378 tctacaacaatgcctatgttttccaggacaaggattcggggaggacggttggaaatgctagagaatggaatggtctttatta 459  Q
    | |   ||||||| | |||||| ||||||||| ||||| |||  ||  |||||||||||||||||||||| |||||||||||    
T  46146647 tttg--acaatgcttgtgtttttcaggacaagaattcgaggaaaacaattggaaatgctagagaatggaaaggtctttatta 46146568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 28095572 - 28095520
Alignment:
Q  116 aatgcttcagataaaccatataagcaatattggatactagattcaagagccac 168  Q
    |||||||| |||||||||| ||| |||||||||||| |||||||  |||||||    
T  28095572 aatgcttcggataaaccatctaaccaatattggatattagattctggagccac 28095520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 179 - 480
Target Start/End: Complemental strand, 25475773 - 25475470
Alignment:
Q  179 acacttctccacttattcacattgtcttatcaacaagaaaacatccacaacaattggttcccttataactgtagcaggtaaaggaaatgtccaaataagc 278  Q
    |||||||||||||||||||| || || || ||||||||||| || || | ||  |||||||||||||| |||||||||| |||||||||||||||||||     
T  25475773 acacttctccacttattcaccttatcctagcaacaagaaaatatacatagcatatggttcccttataattgtagcaggttaaggaaatgtccaaataaga 25475674  T
Q  279 ccatctataatcctacaaaacgtctttcatattctaaaactgtccgctagcctaatttccgcacaaaaactcac-aaagagctatcatgtaatgttg-tt 376  Q
     || |||||||||||||||| ||   ||||||||  ||| | ||| || |||||||||||  ||| |||||||| ||||| |||||||||||| ||| ||    
T  25475673 tcaactataatcctacaaaatgtacatcatattcccaaattatccactggcctaatttccatacagaaactcacaaaagaactatcatgtaatattgttt 25475574  T
Q  377 ttctacaacaatgcctatgttttccaggacaaggattcggggaggacggttggaaatgctagagaatggaatggtctttattattttcaaaaccagaatt 476  Q
    || || |||||||| | | |||  ||||||| ||||| ||| | |||| ||||||||||||||||||||||||||||||||| |||| | |||||||||     
T  25475573 ttttataacaatgcttgtatttgtcaggacacggatttgggaaagacgattggaaatgctagagaatggaatggtctttattgttttgataaccagaatc 25475474  T
Q  477 tcct 480  Q
    ||||    
T  25475473 tcct 25475470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 462
Target Start/End: Original strand, 41894345 - 41894570
Alignment:
Q  238 cccttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttcatattctaaaactgtccgctagcctaatttc 337  Q
    |||||||||||||||||||| |||| ||||||||| | |  ||||  || | |||| | || ||| ||||||| | |||| ||||| ||||||| |||||    
T  41894345 cccttataactgtagcaggtcaagggaatgtccaacttaatccattcatgaccctaaacaatgtccttcatatcccaaaattgtccactagcctgatttc 41894444  T
Q  338 cgcacaaaaactcacaaa-gagctatcatgtaatgttgttttctacaacaatgcctatgttttccaggacaaggattcggggaggacggttggaaatgct 436  Q
    |  | ||||||||| ||| || ||||||||||||||| ||||| | || ||  | | |||||| |||||||| || ||||||||||||||||||| ||||    
T  41894445 cataaaaaaactcataaatgacctatcatgtaatgttattttcgataataactcttgtgtttttcaggacaaagagtcggggaggacggttggaattgct 41894544  T
Q  437 agagaatggaatggtctttattattt 462  Q
    |||||||||||||||||||| |||||    
T  41894545 agagaatggaatggtctttactattt 41894570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 1424755 - 1424870
Alignment:
Q  181 acttctccacttattcacattgtcttatcaacaagaaaacatccacaacaattggttcccttataactgtagcaggtaaaggaaatgtccaaataagccc 280  Q
    |||||||||||||||||| |||||||| ||||||||||| ||| |           || |||||||||||||||||| |||||||||||||||||| |||    
T  1424755 acttctccacttattcaccttgtcttagcaacaagaaaatatcta-----------tcacttataactgtagcaggttaaggaaatgtccaaataaaccc 1424843  T
Q  281 atctataatcctacaaaacgtctttca 307  Q
    | |||||||||||||||| ||| ||||    
T  1424844 aactataatcctacaaaatgtccttca 1424870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 2412090 - 2412158
Alignment:
Q  394 tgttttccaggacaaggattcggggaggacggttggaaatgctagagaatggaatggtctttattattt 462  Q
    |||||| |||||||| || |||||||||||| ||| || |||||||||||||||||||||||| |||||    
T  2412090 tgtttttcaggacaaagagtcggggaggacgattgaaattgctagagaatggaatggtctttactattt 2412158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 2411845 - 2411911
Alignment:
Q  116 aatgcttcagataaaccatataagcaatattggatactagattcaagagccactaaccacatgacac 182  Q
    ||||||||||||| ||| | ||| ||||| |||||| ||||||| ||||||||| ||||||||||||    
T  2411845 aatgcttcagatacaccctttaaacaatactggatattagattctagagccactcaccacatgacac 2411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 1673840 - 1673812
Alignment:
Q  75 gtacatctctttctccacttccacttggt 103  Q
    |||||||||||||||||||||||||||||    
T  1673840 gtacatctctttctccacttccacttggt 1673812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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