View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_11 (Length: 351)
Name: NF17060_low_11
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 44 - 333
Target Start/End: Original strand, 43368846 - 43369135
Alignment:
| Q |
44 |
attcttaccaatagtttcaatccccttcgaatctccattaataaaagacaaaaggtcatcaagtgaacgttgatcttcttcaacatcaacattcttcttt |
143 |
Q |
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| T |
43368846 |
attcttaccaatagtttcaatccccttcgaatctccattaataaaagacaaaaggtcatcaagtgaacgttgatcttcttcaacatcaacattcttcttt |
43368945 |
T |
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| Q |
144 |
atcctttgaggcccttcaagtaattcttttttcttcttggcatacaatcggttcaaaagcctgatacttggatcgttagtgacatttataatgggctcta |
243 |
Q |
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| T |
43368946 |
atcctttgaggcccttcaagtaattgttttttcttcttggcatacaatcggttcaaaagcctgatacttggatcgttagtgacatttataatgggctcta |
43369045 |
T |
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| Q |
244 |
atttctcttcctctgtaagatcatcagacacatgaaacatgtcacgaatttcctccggcgatctttttccaactattcgagctagtgctt |
333 |
Q |
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| T |
43369046 |
atttctcttcctctgtaagatcatcagacacatgaaacatgtcacgaatttcctccggcgatctttttccaattattcgagcgagtgctt |
43369135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 331
Target Start/End: Original strand, 43364721 - 43364985
Alignment:
| Q |
67 |
ccttcgaatctccattaataaaagacaaaaggtcatcaagtgaacgttgatcttcttcaacatcaacattcttctttatcctttgaggcccttcaagtaa |
166 |
Q |
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| T |
43364721 |
ccttcggatcaccattaataaaagacagaaggtcgtcaactgaacgttcatcttcttcaacatcaacattcttctttatgctttcacgctctttaagtag |
43364820 |
T |
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| Q |
167 |
ttcttttttcttcttggcatacaatcggttcaaaagcctgatacttggatcgttagtgacatttataatgggctctaatttctcttcctctgtaagatca |
266 |
Q |
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| T |
43364821 |
ttctcttctcttcttggcatacaagcggttcaaaagcctgatgcttgggtcatcagtgatgtttaacaagggctccaatttctcttcctcggtaagatca |
43364920 |
T |
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| Q |
267 |
tcagacacatgaaacatgtcacgaatttcctccggcgatctttttccaactattcgagctagtgc |
331 |
Q |
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| T |
43364921 |
tcaggcacacgaaatatgctgcgtatttcctctggcgaccttttttcaattattcgagctagtgc |
43364985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 24618245 - 24618129
Alignment:
| Q |
170 |
ttttttcttcttggcatacaatcggttcaaaagcctgatacttggatcgttagtgacatttataatgggctctaatttctcttcctctgtaagatcatca |
269 |
Q |
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| T |
24618245 |
ttttctcttctttgcatacaagcagttcataagcctgatacttggatcgcaagttatgtttaacatctgctccaatttctcttcctccataagatcatca |
24618146 |
T |
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| Q |
270 |
gacacatgaaacatgtc |
286 |
Q |
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| T |
24618145 |
ggcaaatgaaatatgtc |
24618129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 11368039 - 11368002
Alignment:
| Q |
77 |
tccattaataaaagacaaaaggtcatcaagtgaacgtt |
114 |
Q |
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| T |
11368039 |
tccattaataaaagacaaaaggtcatcaactgaacgtt |
11368002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 11367269 - 11367227
Alignment:
| Q |
175 |
tcttcttggcatacaatcggttcaaaagcctgatacttggatc |
217 |
Q |
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| T |
11367269 |
tcttcttggcatacaagcggttcaaaagccttatccttggatc |
11367227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 11367106 - 11367034
Alignment:
| Q |
253 |
cctctgtaagatcatcagacacatgaaacatgtcacgaatttcctccggcgatctttttccaactattcgagc |
325 |
Q |
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| T |
11367106 |
cctctgtaagatcatcaggcaaatgaaatatatcacgtatctcctccggtgatcttccttcaattattcgagc |
11367034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 29388524 - 29388552
Alignment:
| Q |
77 |
tccattaataaaagacaaaaggtcatcaa |
105 |
Q |
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| T |
29388524 |
tccattaataaaagacaaaaggtcatcaa |
29388552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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