View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_12 (Length: 333)
Name: NF17060_low_12
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 24719913 - 24719779
Alignment:
| Q |
11 |
cacagatgatccatagtggacaagaccttctttagaattagatgaaatctgattaagtttaacaccacaaataaaataaaaaatccaataataactatga |
110 |
Q |
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||||||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
24719913 |
cacagattatccatagcgggcaagaccacctttagaattaaatgaaatctgattaagtttaacaccacaaataaaataaaaaatccaggaatgactatga |
24719814 |
T |
|
| Q |
111 |
ccactattcctaattttaatcctttcaccgaaccc |
145 |
Q |
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| T |
24719813 |
ccactattcctacttttaatcctttcaccgaaccc |
24719779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 24678468 - 24678337
Alignment:
| Q |
11 |
cacagatgatccatagtggacaagaccttctttagaattagatgaaatctgattaagtttaacaccacaaataaaataaaaaatccaataataactatga |
110 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | | ||||| ||| |||||||| |||||||||||| |||||||| |||| ||||||| |
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| T |
24678468 |
cacagatgatccatagcggacaagaccttctttagaatcaaacgaaattggataaagtttaatgccacaaataaaa---aaaatccagtaatgactatga |
24678372 |
T |
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| Q |
111 |
ccactattcctaattttaatcctttcaccgaaccc |
145 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24678371 |
ccactattcctaattttaatcctttcaccgaaccc |
24678337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 24719715 - 24719613
Alignment:
| Q |
209 |
tctcattaattaattgagctaatacaagttgtatatatacacaagagtgtctgca------cttattatgtgtgacaaacatgagatcacttacacttaa |
302 |
Q |
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|||||||||| |||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||| |||| |
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| T |
24719715 |
tctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatgagatcactaacatttaa |
24719616 |
T |
|
| Q |
303 |
cta |
305 |
Q |
| |
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||| |
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| T |
24719615 |
cta |
24719613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 24678273 - 24678161
Alignment:
| Q |
209 |
tctcattaattaattgagctaatacaagttgtatatatacacaagagtgtctgca------cttattatgtgtgacaaacatgagatcacttacacttaa |
302 |
Q |
| |
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|||||||||| ||||||| || |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || || ||||| |
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| T |
24678273 |
tctcattaatgaattgagatagtacaagttgtatatatacacaagattgtctcgatgttagcttattatgtgtgacaaacatgagatcgctaactcttaa |
24678174 |
T |
|
| Q |
303 |
ctatctaatgatt |
315 |
Q |
| |
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|||| |||||||| |
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| T |
24678173 |
ctatttaatgatt |
24678161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 10876114 - 10876165
Alignment:
| Q |
209 |
tctcattaattaattgagctaatacaagttgtatatatacacaagagtgtct |
260 |
Q |
| |
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|||||||||| |||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
10876114 |
tctcattaatgaattaagcttgaacaagttgtatatatacacaagagtgtct |
10876165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 24692341 - 24692270
Alignment:
| Q |
11 |
cacagatgatccatagtggacaagaccttctttagaattagatgaaatctgattaagtttaacaccacaaat |
82 |
Q |
| |
|
|||||||||| ||||| | |||| ||||||||||||||| ||| |||||||||||||| || |||||||| |
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| T |
24692341 |
cacagatgattcatagcgaacaaatccttctttagaattaaatggaatctgattaagttcaatgccacaaat |
24692270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 20528417 - 20528457
Alignment:
| Q |
209 |
tctcattaattaattgagctaatacaagttgtatatataca |
249 |
Q |
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| T |
20528417 |
tctcattaatgaattgagctagtacaagttgtatatataca |
20528457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 19242584 - 19242533
Alignment:
| Q |
209 |
tctcattaattaattgagctaatacaagttgtatatatacacaagagtgtct |
260 |
Q |
| |
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||||||| || |||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
19242584 |
tctcattgatgaattgagctagtacaagttttatatatacacaaaagtgtct |
19242533 |
T |
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