View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17060_low_13 (Length: 277)

Name: NF17060_low_13
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17060_low_13
NF17060_low_13
[»] chr4 (18 HSPs)
chr4 (122-277)||(22606201-22606356)
chr4 (117-277)||(38767893-38768053)
chr4 (117-277)||(48407054-48407214)
chr4 (117-277)||(53663471-53663631)
chr4 (117-277)||(39732912-39733072)
chr4 (117-277)||(45105908-45106068)
chr4 (117-277)||(50523707-50523867)
chr4 (117-277)||(49723885-49724042)
chr4 (125-277)||(30418237-30418393)
chr4 (117-277)||(53403952-53404107)
chr4 (125-277)||(28963712-28963864)
chr4 (119-277)||(29385882-29386032)
chr4 (140-277)||(26457213-26457350)
chr4 (148-240)||(8510297-8510389)
chr4 (117-277)||(16202934-16203090)
chr4 (117-250)||(51677231-51677359)
chr4 (117-177)||(5937729-5937789)
chr4 (224-277)||(5937786-5937839)
[»] chr8 (13 HSPs)
chr8 (117-277)||(35802180-35802340)
chr8 (117-276)||(2025616-2025775)
chr8 (117-277)||(36821462-36821623)
chr8 (117-277)||(35164217-35164377)
chr8 (119-277)||(45276241-45276399)
chr8 (117-277)||(8416764-8416925)
chr8 (117-277)||(22936406-22936566)
chr8 (117-277)||(13015781-13015940)
chr8 (147-277)||(33165893-33166024)
chr8 (117-277)||(3590176-3590331)
chr8 (211-276)||(924204-924269)
chr8 (117-228)||(7637381-7637490)
chr8 (148-212)||(37684004-37684068)
[»] chr3 (18 HSPs)
chr3 (117-277)||(45150700-45150860)
chr3 (121-277)||(11263793-11263949)
chr3 (117-274)||(30810813-30810970)
chr3 (117-277)||(28182472-28182632)
chr3 (117-277)||(48181171-48181332)
chr3 (117-277)||(42074494-42074650)
chr3 (117-252)||(42274644-42274779)
chr3 (117-277)||(39251578-39251739)
chr3 (117-277)||(50392657-50392816)
chr3 (121-277)||(51229829-51229985)
chr3 (121-277)||(53687217-53687373)
chr3 (142-273)||(51407570-51407701)
chr3 (125-277)||(48254347-48254500)
chr3 (168-277)||(33025685-33025794)
chr3 (117-274)||(45488944-45489104)
chr3 (147-277)||(28883792-28883922)
chr3 (174-277)||(44610718-44610820)
chr3 (117-250)||(44328781-44328914)
[»] scaffold0097 (1 HSPs)
scaffold0097 (117-277)||(32898-33058)
[»] chr5 (16 HSPs)
chr5 (117-277)||(41039972-41040132)
chr5 (117-277)||(10900234-10900393)
chr5 (127-277)||(31905532-31905683)
chr5 (117-277)||(41742057-41742218)
chr5 (117-277)||(11018265-11018425)
chr5 (118-269)||(8958340-8958491)
chr5 (147-277)||(40979521-40979651)
chr5 (140-277)||(53526-53663)
chr5 (149-277)||(25256682-25256810)
chr5 (149-277)||(25320473-25320601)
chr5 (120-277)||(33387539-33387692)
chr5 (204-277)||(19375330-19375402)
chr5 (187-277)||(19356603-19356694)
chr5 (223-277)||(2526385-2526439)
chr5 (149-277)||(33082777-33082902)
chr5 (134-163)||(19356703-19356732)
[»] chr2 (12 HSPs)
chr2 (117-277)||(7473620-7473780)
chr2 (121-277)||(37640601-37640757)
chr2 (117-277)||(43342112-43342273)
chr2 (117-277)||(44002749-44002909)
chr2 (134-277)||(35458037-35458181)
chr2 (122-277)||(32497051-32497205)
chr2 (117-277)||(37996820-37996979)
chr2 (180-277)||(17480916-17481014)
chr2 (147-277)||(43695066-43695195)
chr2 (190-274)||(19860358-19860439)
chr2 (218-277)||(3738985-3739044)
chr2 (117-162)||(17481005-17481050)
[»] chr7 (16 HSPs)
chr7 (117-277)||(30139664-30139825)
chr7 (117-277)||(14999970-15000130)
chr7 (119-277)||(25472602-25472761)
chr7 (117-277)||(26827603-26827759)
chr7 (121-277)||(43664656-43664810)
chr7 (117-277)||(30825292-30825451)
chr7 (117-232)||(26826519-26826634)
chr7 (117-277)||(25970535-25970695)
chr7 (142-277)||(45202573-45202707)
chr7 (117-277)||(47158059-47158219)
chr7 (121-274)||(2000011-2000162)
chr7 (147-277)||(32450853-32450982)
chr7 (198-277)||(37371181-37371260)
chr7 (121-277)||(298500-298656)
chr7 (117-274)||(47085524-47085682)
chr7 (147-250)||(25191727-25191831)
[»] chr1 (25 HSPs)
chr1 (117-277)||(47655723-47655884)
chr1 (117-277)||(41512246-41512406)
chr1 (117-277)||(44740247-44740407)
chr1 (117-277)||(46033513-46033673)
chr1 (117-277)||(13509776-13509936)
chr1 (134-267)||(27416676-27416808)
chr1 (117-277)||(50030930-50031092)
chr1 (149-277)||(24075624-24075752)
chr1 (117-275)||(4485020-4485175)
chr1 (117-277)||(42137537-42137697)
chr1 (117-277)||(6706234-6706392)
chr1 (117-277)||(11050936-11051093)
chr1 (117-277)||(49430735-49430894)
chr1 (117-250)||(1762347-1762478)
chr1 (152-250)||(27067264-27067362)
chr1 (213-277)||(3850797-3850861)
chr1 (147-277)||(31100333-31100462)
chr1 (148-277)||(45179434-45179562)
chr1 (217-277)||(11051098-11051158)
chr1 (147-277)||(11829179-11829306)
chr1 (166-231)||(7385363-7385429)
chr1 (117-213)||(20473640-20473736)
chr1 (117-213)||(20557817-20557913)
chr1 (147-213)||(20364593-20364659)
chr1 (147-213)||(20546252-20546318)
[»] scaffold0068 (1 HSPs)
scaffold0068 (117-277)||(37797-37958)
[»] scaffold0006 (1 HSPs)
scaffold0006 (117-275)||(91640-91798)
[»] scaffold0808 (1 HSPs)
scaffold0808 (117-277)||(4192-4350)
[»] scaffold0069 (1 HSPs)
scaffold0069 (117-275)||(16919-17073)
[»] chr6 (6 HSPs)
chr6 (152-273)||(20838366-20838487)
chr6 (117-250)||(27825128-27825261)
chr6 (176-245)||(365731-365801)
chr6 (148-277)||(30134249-30134374)
chr6 (117-232)||(10683304-10683417)
chr6 (223-277)||(4146913-4146967)
[»] scaffold0184 (1 HSPs)
scaffold0184 (188-277)||(9601-9690)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 122 - 277
Target Start/End: Original strand, 22606201 - 22606356
Alignment:
Q  122 aactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggaga 221  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22606201 aactcatgaccataaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggaga 22606300  T
Q  222 attgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||| ||||||||||  |  ||||||||||||||||||||    
T  22606301 attgataaagggcaataaagaaaaataataggctgtaataatcaaaatataaaatt 22606356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 38768053 - 38767893
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||||||| |||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38768053 ttggtaactcacgaccataaacatttttcaggtgctaatttggttcgctaagttttccgattaaattttgttcatcaaattaattacaaagcaaaaagaa 38767954  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||| | |||||||||||||||||| ||  ||||||||||||||||||||    
T  38767953 ggagaattgataaagtgaaataaaggaaaataataggttgtaataatcaaaatataaaatt 38767893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 48407214 - 48407054
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48407214 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttatgattaaattttgttcatcaaattaattacaaagcaaaaagaa 48407115  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
     |||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||    
T  48407114 agagaattgataaagggcaataaagaaaaataatagattgtaataatcaaaatataaaatt 48407054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 53663471 - 53663631
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53663471 ttggtaactcatgaccataaacatttttcaggggctaattaggttcgttaagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 53663570  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| |||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  53663571 ggaggattgataaagggtaataaaggaaaataataggttgtaataatcaaaatataaaatt 53663631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 39733072 - 39732912
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||  ||||| |||||||||| | || ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  39733072 ttggtaactcatgaccataaatattttatgggggttaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 39732973  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  39732972 ggagaattgataaagggcgataaaggaaaataataggttgtaataatcaaaatataaaatt 39732912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 45106068 - 45105908
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| | |||||||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  45106068 ttggtaactcatgaccataaacaattttcgggggctaaattggttggttaagttttcttattaaatttggttcatcaaattaattacaaagtaaaaagaa 45105969  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
     |||||||||||||||| | ||||||||||||||||  || |||||||||||||| |||||    
T  45105968 agagaattgataaagggaagtaaaggaaaataataggctttaataatcaaaatattaaatt 45105908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 50523707 - 50523867
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  50523707 ttggtaactcatgaccataaatattttatgggggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 50523806  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    | ||||||||||||||||||||| ||||||||| || ||  |||||||||||||| |||||    
T  50523807 gaagaattgataaagggcaataatggaaaataacaggttgtaataatcaaaatattaaatt 50523867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 49724042 - 49723885
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||||||||||  || ||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  49724042 ttggtaactcatgaccataaacatttttcaaggactaatttggttcgttaatttttctgattaaatttggtttatcaaattaattacaaagcaaaaagaa 49723943  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||  |||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  49723942 ggagaat--ataaaggg-aataaaggaaaataataggttgtaataatcaaaatataaaatt 49723885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 30418237 - 30418393
Alignment:
Q  125 tcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaagaaggagaat 223  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  30418237 tcatgaccataaacatttttcgggggctaatttgattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaat 30418336  T
Q  224 tgataaagg---gcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||    ||||||||||||||||||| ||  ||||||||||||| ||||||    
T  30418337 tgataaaggagaacaataaaggaaaataataggttgtaataatcaaaatagaaaatt 30418393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 53403952 - 53404107
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||||     | |||||||||||||||||||||||||||| ||    
T  53403952 ttggtaactcatgaccataaacatttttcggtggctaatttggttcgttatgttttctgatt-----tggttcatcaaattaattacaaagcaaaaaaaa 53404046  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||  |||||||||||| ||||| ||  ||||||||||||||||||||    
T  53404047 ggagaattgataaaggataataaaggaaaacaataggttgtaataatcaaaatataaaatt 53404107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 28963712 - 28963864
Alignment:
Q  125 tcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaagaaggagaat 223  Q
    |||||||| ||||||||||||  ||||||||||  |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  28963712 tcatgaccataaacatttttcaagggctaatttaattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaat 28963811  T
Q  224 tgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||| ||||||||||| ||  ||||||||||||| ||||||    
T  28963812 tgataaagggcaataaa-gaaaataataggttgtaataatcaaaatagaaaatt 28963864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 119 - 277
Target Start/End: Original strand, 29385882 - 29386032
Alignment:
Q  119 ggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaagg 218  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||  |||||||       ||||||||||||||||||    
T  29385882 ggtaagtcatgaccttaaatatttttcgggggctaatttggttcgttaaattttctaattaaatttgattcatca-------tacaaagcaaaaagaagg 29385974  T
Q  219 agaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||| |||||| |||||||||| ||  ||||||||||||| ||||||    
T  29385975 agaattgataaagggc-ataaagaaaaataataggttgtaataatcaaaataaaaaatt 29386032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 277
Target Start/End: Complemental strand, 26457350 - 26457213
Alignment:
Q  140 tttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataa 239  Q
    ||||||| ||||||||||| ||||  ||||||||| ||||||||  || |||||||| ||||| ||||||||||||| |||||||||||||| |||||||    
T  26457350 tttttcgagggctaatttgattcgtcaagttttctaattaaattcggtacatcaaatcaattaaaaagcaaaaagaatgagaattgataaagagcaataa 26457251  T
Q  240 aggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||| |||||||||  |  |||||| |||||||||||||    
T  26457250 agggaaataataggatgtaataattaaaatataaaatt 26457213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 8510389 - 8510297
Alignment:
Q  148 gggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaa 240  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||  |||||||||||| ||||||||||||||||||| |||||||    
T  8510389 gggctaatttggttcgttaagttttctgattaaatttggttcattaaattagatacaaagcaaaaggaaggagaattgataaaggccaataaa 8510297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 16202934 - 16203090
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| ||||| || || ||||||| ||||  ||| |||| ||||||||||| |||||||||||||| |||||| ||||||||     
T  16202934 ttggtaactcatgaccataaatattttccgagg-ctaatttagttcattaatttttttgattaaatttggttcatcaaattaaatacaaaccaaaaaga- 16203031  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
      ||||||||| |||| | ||||||||||||||| | ||  |||||| |||||||||||||    
T  16203032 --agaattgatgaaggacgataaaggaaaataatgggttgtaataattaaaatataaaatt 16203090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 51677359 - 51677231
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||| | |||| ||||  | || |||||||||| ||| | | |||| ||||||||||| |||||||||||||| || |    ||||||||    
T  51677359 ttggtaactcatgatcataaatatttc-ctggagctaatttggatcgttgaattttttgattaaatttggttcatcaaattaaataaa----aaaaagaa 51677265  T
Q  217 ggagaattgataaagggcaataaaggaaaataat 250  Q
    ||||||||||||||||| |||||| |||||||||    
T  51677264 ggagaattgataaagggaaataaaagaaaataat 51677231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 5937729 - 5937789
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgat 177  Q
    |||||||||||||| | |||| |||||  |||||||||||||||||| |||||||||||||    
T  5937729 ttggtaactcatgatcataaatattttatgggggctaatttggttcgttaagttttctgat 5937789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 5937786 - 5937839
Alignment:
Q  224 tgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||| ||||| |||||||||||| ||  ||||||||||||||||||||    
T  5937786 tgataaagggaaataagggaaaataataggttgtaataatcaaaatataaaatt 5937839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 35802180 - 35802340
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  35802180 ttggtaactcatgaccataaacatttttcgggggctaatttggtttgttaagttttctgattaaattgtgttcatcaaattaattataaagcaaaaagaa 35802279  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  35802280 ggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatt 35802340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 117 - 276
Target Start/End: Complemental strand, 2025775 - 2025616
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||||||||||||  ||| |||||  |||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  2025775 ttggtaactcatgaccacaaatattttatgggggctaatttagttcgttaagttttatgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 2025676  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaat 276  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  2025675 ggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaat 2025616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 36821462 - 36821623
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttct-gattaaattttgttcatcaaattaattacaaagcaaaaaga 215  Q
    |||||||||||| ||| | || |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||||||    
T  36821462 ttggtaactcataaccattaatatttttcgggggctaatttggttcgctaagtttttttgattaaatttggttcatcaaattaattagaaagcaaaaaga 36821561  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    | |||||||| ||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  36821562 atgagaattgttaaagggtaataaaggaaaataataggttgtaataatcaaaatataaaatt 36821623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 35164217 - 35164377
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  35164217 ttggtaactcatgaccataaacatttatcggaggctaatttggttggttaagttttctgattaaatttggttcatcaaactaattacaaaacaaaaagaa 35164316  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||| ||||||||||||||| ||||||||||  ||  |||||| ||||||| |||||    
T  35164317 ggagaattaataaagggcaataaaagaaaataataagttgtaataattaaaatattaaatt 35164377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 277
Target Start/End: Original strand, 45276241 - 45276399
Alignment:
Q  119 ggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaag 217  Q
    ||||| ||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||    
T  45276241 ggtaagtcatgacct-aaacattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagtag 45276339  T
Q  218 gagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||||||| ||||||    
T  45276340 gagaattgataaagggcaacaaaggaaaataataggttgtaataatcaaaatagaaaatt 45276399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 8416925 - 8416764
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||  ||||||||| ||||| ||| |||||||| ||| ||||||||||||||||||    
T  8416925 ttggtaagtcatgaccataaacatttttcgggtgctaatttggttcgtgaagttttctaattaattttggttcatcatatttaattacaaagcaaaaaga 8416826  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||| ||||||||||||||||||||||||||||||  ||  ||||||||||||| ||||||    
T  8416825 aggagtattgataaagggcaataaaggaaaataataagttgtaataatcaaaatagaaaatt 8416764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 22936406 - 22936566
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaaga 215  Q
    ||||||| ||| |||| |||| |||||| |||||||||||||||||| ||| |||||| ||||||||| |||||||||||||| ||||||| ||||||||    
T  22936406 ttggtaagtcacgaccataaatattttt-gggggctaatttggttcgttaacttttctaattaaatttggttcatcaaattaaattacaaaacaaaaaga 22936504  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||| ||||||||||||||||||| ||  ||||||| ||||| ||||||    
T  22936505 aggagaattgataaaggccaataaaggaaaataataggttgtaataatcgaaatagaaaatt 22936566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 13015940 - 13015781
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||| ||||| |||| ||||||  | | |||||||| |||| ||| |||| |||||||||||  ||||||||||||| |||||| |||||||||    
T  13015940 ttggtaactcttgaccataaatatttttttgtg-ctaatttgattcgttaaattttttgattaaatttgattcatcaaattaaatacaaaccaaaaagaa 13015842  T
Q  217 ggagaattgataaagggcaataaaggaaaataa-tagttttcaataatcaaaatataaaatt 277  Q
     ||||||||||||||| ||||||||||||||||  |||| | ||||||||||||||||||||    
T  13015841 agagaattgataaaggacaataaaggaaaataacgagttgt-aataatcaaaatataaaatt 13015781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 33166024 - 33165893
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    ||||||||||||||||| ||| |||| |||||||||||  ||| ||||||||| |||||| || ||| |||||||||||||||||| |||||||||||||    
T  33166024 ggggctaatttggttcgttaaattttttgattaaatttgtttcctcaaattaaatacaaaccataaaaaaggagaattgataaaggacaataaaggaaaa 33165925  T
Q  247 taatagttttcaataatc-aaaatataaaatt 277  Q
    |||| | ||  ||||||| |||||||||||||    
T  33165924 taatgggttgtaataatcaaaaatataaaatt 33165893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 3590331 - 3590176
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| ||||| | | ||||||||| ||||| ||| |||| | ||||||||| |||||||||||||| ||||||  |||||||     
T  3590331 ttggtaactcatgaccataaatatttt-ctgaggctaatttagttcgttaattttttt-attaaatttggttcatcaaattaaatacaaactaaaaaga- 3590235  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
      ||||||||| |||| ||||||| |||||||||   ||  |||||| |||||||||||||    
T  3590234 --agaattgatgaaggacaataaaagaaaataatttgttgtaataattaaaatataaaatt 3590176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 924269 - 924204
Alignment:
Q  211 aaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaat 276  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||    
T  924269 aaagaaagagaattgataaagggcaataaagaaaaataataggttgtaataatcaaaatataaaat 924204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 7637490 - 7637381
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||| ||||||||| |||| |||||| |||| |||||||||| |  ||| |||  || ||||||||  ||||||||||||| |||||||||||| |||    
T  7637490 ttggtagctcatgaccataaatattttttgggg-ctaatttggt-cattaaatttattgtttaaatttatttcatcaaattaaatacaaagcaaaatgaa 7637393  T
Q  217 ggagaattgata 228  Q
    ||||||||||||    
T  7637392 ggagaattgata 7637381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 37684004 - 37684068
Alignment:
Q  148 gggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaa 212  Q
    ||||||||||||||||  || ||||  ||| |||||| ||||||||||| || ||||||||||||    
T  37684004 gggctaatttggttcgtcaaatttttagatcaaatttggttcatcaaatcaaatacaaagcaaaa 37684068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 45150860 - 45150700
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45150860 ttggtaattcatgaccataaacatttttcgggggctaatttggttcattaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 45150761  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||    
T  45150760 ggagaattgataaagggcaataaaggaaaataataggttgtaacaatcaaaatataaaatt 45150700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 121 - 277
Target Start/End: Complemental strand, 11263949 - 11263793
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 220  Q
    |||||||||||| ||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11263949 taactcatgaccataaacatttttcgagggctaatttggttcattaagttttctgattgaattttgttcatcaaattaattacaaagcaaaaagaaggag 11263850  T
Q  221 aattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  11263849 aattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatt 11263793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 30810970 - 30810813
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  30810970 ttggtaactcatgaccataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 30810871  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaa 274  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  30810870 ggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaa 30810813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 28182632 - 28182472
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  28182632 ttggcaactcatgaccataaatatttttcgggggctaatttggttcgttaagtcttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 28182533  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||| ||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||    
T  28182532 ggagaactgataaagggcaataaaagaaaataataggttgtaataatcaaaatataaaatt 28182472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 48181332 - 48181171
Alignment:
Q  117 ttggtaactcatgaccttaaacattttt-cgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaaga 215  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  48181332 ttggtaactcatgaccataaacattttttcgggggctaatttggctcgttaagttttctgattaaatttggttcatgaaattaattacaaagcaaaaaga 48181233  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    || |||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  48181232 agaagaatttataaagggcaataaagaaaaataataggttgcaataatcaaaatataaaatt 48181171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 42074650 - 42074494
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42074650 ttggtaactcatgaccataaacatttttcgggggctagcttggtt----aagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 42074555  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||| |||||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  42074554 ggagaattggtaaagggcaataaaggaaaataataggttgtaataatcaaaatattaaatt 42074494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 42274779 - 42274644
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  42274779 ttggtaactcatgactataaacatttttcgggggctaatttggttcgataagttttctgatcaaatttggttcatcaaattaattacaaaggaaaaagaa 42274680  T
Q  217 ggagaattgataaagggcaataaaggaaaataatag 252  Q
    ||| ||||||||| ||||||||||||||||||||||    
T  42274679 ggaaaattgataacgggcaataaaggaaaataatag 42274644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 39251739 - 39251578
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||| || ||||||||    
T  39251739 ttggtaagtcatgaccataaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattaccaaccaaaaaga 39251640  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||| |||||||||  ||  ||||||||||||| ||||||    
T  39251639 aggagaattgataaagggcaataaagaaaaataatatgttgtaataatcaaaatagaaaatt 39251578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 50392657 - 50392816
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||| ||| |||| |||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  50392657 ttggtaactcat-accataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaaacaaaaagaa 50392755  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||| |||||||| |||||||||||||||||||| ||  |||||| |||||||||||||    
T  50392756 ggagaaatgataaagagcaataaaggaaaataataggttgtaataataaaaatataaaatt 50392816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 277
Target Start/End: Complemental strand, 51229985 - 51229829
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 220  Q
    |||||||||||  ||||| |||||||||||||||||||||  | |||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  51229985 taactcatgacgataaacttttttcgggggctaatttggtcggttaagttttcttattaaatttgattcatcaaattaattacaaagcaaaaagaaggag 51229886  T
Q  221 aattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||  ||||| ||||||||||| ||  |||||||||||||| |||||    
T  51229885 aattgataaagggatataaaagaaaataataggttgtaataatcaaaatattaaatt 51229829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 277
Target Start/End: Original strand, 53687217 - 53687373
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 220  Q
    |||||||||| | ||||||||||| || ||||||||||||| | |||||||||| ||| ||||| | ||||||||||||||||||||||||| |||||||    
T  53687217 taactcatgatcataaacattttttggaggctaatttggttggttaagttttcttatttaatttggctcatcaaattaattacaaagcaaaatgaaggag 53687316  T
Q  221 aattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||| |||||||||| ||  |||||||||||||| |||||    
T  53687317 aattgataaagggcaataaagaaaaataataggttgtaataatcaaaatattaaatt 53687373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 51407701 - 51407570
Alignment:
Q  142 tttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaag 241  Q
    ||||||||||||||||| |||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407701 tttcgggggctaatttgtttcgttaaattttctgattaaattcggttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaag 51407602  T
Q  242 gaaaataatagttttcaataatcaaaatataa 273  Q
    ||||||||||  ||  |||||| |||||||||    
T  51407601 gaaaataataagttgtaataattaaaatataa 51407570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 48254347 - 48254500
Alignment:
Q  125 tcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaat 223  Q
    |||||||| ||||||||||||  ||||||||||  |||  |||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  48254347 tcatgaccataaacatttttcaagggctaatttaattccttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaat 48254446  T
Q  224 tgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||| |||||||||| ||  ||||||||||||| ||||||    
T  48254447 tgataaagggcaataaagaaaaataataggttgtaataatcaaaatagaaaatt 48254500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 33025685 - 33025794
Alignment:
Q  168 gttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaa 267  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||  |||||| |||    
T  33025685 gttttctgattaaatttggttcatcgaattaattacaaagcaaaaagaaggagaattgataaagggtagtaaaggaaaataatagtttgtaataattaaa 33025784  T
Q  268 atataaaatt 277  Q
    |||| |||||    
T  33025785 atattaaatt 33025794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 45488944 - 45489104
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaat-----taattacaaagcaaa 211  Q
    |||||||||||| ||| |||| |||||  || || |||||||||||| ||| ||||||  |||||||| |||||||||||     ||| |||||||||||    
T  45488944 ttggtaactcataaccataaatattttctggaggttaatttggttcgttaaattttctagttaaatttggttcatcaaatcaaattaaatacaaagcaaa 45489043  T
Q  212 aagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaa 274  Q
    ||  ||||| ||||||||||| ||||||||||||||||||| ||  |||||||||||||||||    
T  45489044 aa--aggaggattgataaaggacaataaaggaaaataataggttgtaataatcaaaatataaa 45489104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 28883922 - 28883792
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    ||||||||||||||||| ||| | || ||||||||| | || ||| ||||||| ||||||  |||||||||||||||||||||||| | |||||||||||    
T  28883922 ggggctaatttggttcgttaaatattttgattaaatgtggtacattaaattaaatacaaactaaaaagaaggagaattgataaaggacgataaaggaaaa 28883823  T
Q  247 taatagttttcaataatcaaaatataaaatt 277  Q
    |||| | |   ||||||||||||||||||||    
T  28883822 taatgggtaataataatcaaaatataaaatt 28883792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 44610718 - 44610820
Alignment:
Q  174 tgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataa 273  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||| ||||||||||| |||||||| |||||||| ||| | |||||| |||||||||    
T  44610718 tgattaaatttggttcatcaaattaaatacaaatcgaaaagaaggagcattgataaaggacaataaagaaaaataatggttgt-aataattaaaatataa 44610816  T
Q  274 aatt 277  Q
    ||||    
T  44610817 aatt 44610820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 44328914 - 44328781
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctg-attaaattttgttcatcaaattaattacaaagcaaaaaga 215  Q
    |||||||||| ||||| |||| ||||||  ||| ||||||||||||| ||  |||| |  ||||||||| ||| |||||||||| |||||| ||||||||    
T  44328914 ttggtaactcctgaccataaatatttttttggg-ctaatttggttcgttactttttttttattaaatttggtttatcaaattaaatacaaaccaaaaaga 44328816  T
Q  216 aggagaattgataaagggcaataaaggaaaataat 250  Q
    | |||||||||||||||  ||||||||||||||||    
T  44328815 atgagaattgataaaggataataaaggaaaataat 44328781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 32898 - 33058
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898 ttggtaactcatgaccataaatatttttcgggggctgatttggttcgttaggttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 32997  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  32998 ggataattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatt 33058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 41039972 - 41040132
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41039972 ttggtaactcatgaccataaacatttttcgggggctaatttgatttgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 41040071  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
     |||||||||||||||||||||||| |||||||||| ||  |||||||||||| |||||||    
T  41040072 agagaattgataaagggcaataaagaaaaataataggttgtaataatcaaaatttaaaatt 41040132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 10900393 - 10900234
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||  ||||  |||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  10900393 ttggtaactcatgaccataaatcttttatgggg-ctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 10900295  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
     ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  10900294 agagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatt 10900234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 31905683 - 31905532
Alignment:
Q  127 atgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattg 225  Q
    |||||| |||| |||||| ||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  31905683 atgaccataaatattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattg 31905584  T
Q  226 ataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  31905583 ataaagggcaataaaggaaaataatagattttaataatcaaaatagaaaatt 31905532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 41742057 - 41742218
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||| |||||| ||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  41742057 ttggtaagtcatgaccataaatattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 41742156  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||| |||||||||| ||  || |||||||||| ||||||    
T  41742157 aggagaattgataaagggcaataaagaaaaataataggttgtaacaatcaaaatagaaaatt 41742218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 11018265 - 11018425
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||| ||||||||| |||| ||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||    
T  11018265 ttggtagctcatgaccataaatattttacaggggctaatttggttcgctaagttttttgattaaatttggttcatcaaattaattagaaagcaaaaggaa 11018364  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    || |||||| |||||| ||||||||||||||||||| ||  |||||| |||||||||||||    
T  11018365 ggggaattgctaaaggacaataaaggaaaataataggttctaataattaaaatataaaatt 11018425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 269
Target Start/End: Original strand, 8958340 - 8958491
Alignment:
Q  118 tggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaag 217  Q
    |||||| |||||||| ||||||||||  ||||| |||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||     
T  8958340 tggtaattcatgaccataaacattttatgggggttaatttggttggttaagtttcctgattaaatttggttcatcaaattaattacaaagcaaaaagaat 8958439  T
Q  218 gagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaat 269  Q
    |||||||||||||||| ||||||| |||||||||| ||   |||||||||||    
T  8958440 gagaattgataaagggtaataaagaaaaataataggttgttataatcaaaat 8958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 40979651 - 40979521
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    |||| |||||||||| | || ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||    
T  40979651 gggggtaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaggcaaaaagaaggagaattgataaagggcaataaaggagaa 40979552  T
Q  247 taatagttttcaataatcaaaatataaaatt 277  Q
    |||||| ||  ||||||||||||||||||||    
T  40979551 taataggttgtaataatcaaaatataaaatt 40979521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 53526 - 53663
Alignment:
Q  140 tttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataa 239  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||  ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||    
T  53526 tttttcgagggctaatttggttcgttaagttttctaattaaattcggttcatcaaatcaattaaaaagcaaaaaaaatgagaattgataaagggcaataa 53625  T
Q  240 aggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||  ||||||||| ||  |||||| |||||||||||||    
T  53626 agagaaataataggttgtaataattaaaatataaaatt 53663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 25256682 - 25256810
Alignment:
Q  149 ggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggc-aataaaggaaaat 247  Q
    ||||||||||||||| ||  |||| ||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||| | || ||||||||||    
T  25256682 ggctaatttggttcgttatattttttgattaaatttggttcatcaaattaaatacaaaccaaaaaaaaggagaattgataaaggacaaagaaaggaaaat 25256781  T
Q  248 aatagttttcaataatcaaaatataaaatt 277  Q
    ||  ||| | |||||| |||||||||||||    
T  25256782 aagggttgt-aataattaaaatataaaatt 25256810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 25320473 - 25320601
Alignment:
Q  149 ggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggc-aataaaggaaaat 247  Q
    ||||||||||||||| ||  |||| ||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||| | || ||||||||||    
T  25320473 ggctaatttggttcgttatattttttgattaaatttggttcatcaaattaaatacaaaccaaaaaaaaggagaattgataaaggacaaagaaaggaaaat 25320572  T
Q  248 aatagttttcaataatcaaaatataaaatt 277  Q
    ||  ||| | |||||| |||||||||||||    
T  25320573 aagggttgt-aataattaaaatataaaatt 25320601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 277
Target Start/End: Original strand, 33387539 - 33387692
Alignment:
Q  120 gtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaagga 219  Q
    ||||||||||||| |||| ||||| | | ||||||||| ||||  ||| |||| ||||||||||| |||||||||||||| |||||| ||||||||   |    
T  33387539 gtaactcatgaccataaatatttt-ctgaggctaatttagttcattaatttttttgattaaatttggttcatcaaattaaatacaaaccaaaaaga---a 33387634  T
Q  220 gaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||| |||| | ||||||||||||||| | ||  |||||| |||||||||||||    
T  33387635 gaattgatgaaggacgataaaggaaaataatgggttgtaataattaaaatataaaatt 33387692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 19375330 - 19375402
Alignment:
Q  204 aaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  19375330 aaagcaaaaagaaggagaattgataaagggc-ataaaggaaaataataggttgtaataatcaaaatataaaatt 19375402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 19356694 - 19356603
Alignment:
Q  187 ttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||  |||||| |||||| ||||||    
T  19356694 ttcatcaaattaaattacaaaggaaaaagaaggagaattgataaagggcaataatgaaaaataatagattgtaataataaaaatagaaaatt 19356603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 2526439 - 2526385
Alignment:
Q  223 ttgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||| ||||||||||||||||| | ||  ||||||||||||||||||||    
T  2526439 ttgataaaggacaataaaggaaaataatgggttgtaataatcaaaatataaaatt 2526385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 33082777 - 33082902
Alignment:
Q  149 ggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 248  Q
    ||||| ||| ||||| ||| ||||  |||||||||| |||||| ||||||| |||||| |||||||||    ||||||| || | |||||||| ||||||    
T  33082777 ggctagtttagttcgttaattttttcgattaaatttggttcattaaattaaatacaaaccaaaaagaat---aattgatgaaagacaataaagaaaaata 33082873  T
Q  249 atagttttcaataatcaaaatataaaatt 277  Q
    || | ||  |||||| |||||||||||||    
T  33082874 attggttgtaataattaaaatataaaatt 33082902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 19356732 - 19356703
Alignment:
Q  134 taaacatttttcgggggctaatttggttcg 163  Q
    ||||||||||||||||||||||||||||||    
T  19356732 taaacatttttcgggggctaatttggttcg 19356703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 7473780 - 7473620
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7473780 ttggtaattcatgaccataaacatttttcgggggctaatttggttcactaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 7473681  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
     ||||||||||||||| ||||||| ||||||||||| ||  ||||||||||||||||||||    
T  7473680 agagaattgataaaggacaataaaagaaaataataggttgtaataatcaaaatataaaatt 7473620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 277
Target Start/End: Original strand, 37640601 - 37640757
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 220  Q
    |||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37640601 taactcatgaccataaacatttttcaggggttaatttggttcgttaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 37640700  T
Q  221 aattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| ||||||||||||||||||||||||||  ||   |||||||||||||||||||    
T  37640701 aatttataaagggcaataaaggaaaataatatgttgtgataatcaaaatataaaatt 37640757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 43342112 - 43342273
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||| ||||||| ||||||||||||||| | |||||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  43342112 ttggtaagtcatgaccataaatatttttcaggggctaatttggtttgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 43342211  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  43342212 aggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatt 43342273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 44002909 - 44002749
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||  |||||||||||||||| | || ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  44002909 ttggtaactcatgaccataaatattttatgggggctaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 44002810  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||| |||||||||||||| |||||| |||||||||| ||  ||||||||||||||||||||    
T  44002809 ggataattgataaagggcgataaagaaaaataataggttgtaataatcaaaatataaaatt 44002749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 277
Target Start/End: Original strand, 35458037 - 35458181
Alignment:
Q  134 taaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagg 232  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||| |  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  35458037 taaacatttttcgggggctaatttggttcgttaagttttctaattaaatatgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagg 35458136  T
Q  233 gcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||| |||||||||| ||  ||||||||||||| ||||||    
T  35458137 gcaataaagaaaaataataggttgtaataatcaaaatagaaaatt 35458181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 277
Target Start/End: Original strand, 32497051 - 32497205
Alignment:
Q  122 aactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggaga 221  Q
    |||| |||||| |||||||||||||||   |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| | | || ||||    
T  32497051 aactgatgaccataaacatttttcgggtaataatttggttcgttaagttttctgattaaatttgattcatcaaattaattacaaagcagagataatgaga 32497150  T
Q  222 attgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||| ||||||||||||||||||||| ||  ||||||  ||||||||||||    
T  32497151 attgataaa-ggcaataaaggaaaataataggttataataattcaaatataaaatt 32497205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 37996979 - 37996820
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||| | | ||||||||||| ||  ||||||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||  |    
T  37996979 ttggtaactcattatcataaacattttttggaagctaatttgattcgttaagttttccgattaaatttggttcatcaaataaattacaaagcaaaaa-ta 37996881  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
     ||||||||||| ||||||||||| ||||||||||  ||  ||||||||| ||||||||||    
T  37996880 tgagaattgatacagggcaataaatgaaaataatatgttgtaataatcaagatataaaatt 37996820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 17481014 - 17480916
Alignment:
Q  180 aattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  17481014 aatttggttcatcaaattaaattacaaagcaaaatgaaggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatt 17480916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 43695195 - 43695066
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    ||||||||||||||||| ||  |||| | ||||||  | || ||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||     
T  43695195 ggggctaatttggttcgttatatttttttattaaacgtggtacattaaattaaatacaaaccaaaaagaaggagaattgataaaggacaataaaggaaa- 43695097  T
Q  247 taatagttttcaataatcaaaatataaaatt 277  Q
    |||| | |   ||||||||||||||||||||    
T  43695096 taatgggtaataataatcaaaatataaaatt 43695066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 19860439 - 19860358
Alignment:
Q  190 atcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaa 274  Q
    |||||||||| |||||||||||| |   ||||||||||||||| ||||||||||||||||||| ||  |||||||||||||||||    
T  19860439 atcaaattaaatacaaagcaaaacg---gagaattgataaaggacaataaaggaaaataataggttgtaataatcaaaatataaa 19860358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 3738985 - 3739044
Alignment:
Q  218 gagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||| |||||||||| ||  |||||||||||||| |||||    
T  3738985 gagaattgataaagggcaataaagaaaaataataggttgtaataatcaaaatattaaatt 3739044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 17481050 - 17481005
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttc 162  Q
    ||||||| |||||| | |||| ||||||||||||||||||||||||    
T  17481050 ttggtaagtcatgatcataaatatttttcgggggctaatttggttc 17481005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 30139664 - 30139825
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||| ||||||||||||||||    
T  30139664 ttggtaagtcatgaccgtaaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggtttatcaaattaaattacaaagcaaaaaga 30139763  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  30139764 aggagaattgataaagggcaataaaggaaaataataggttataataatcaaaatagaaaatt 30139825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 15000130 - 14999970
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15000130 ttggtaactcatgaccataaacatttttcaggggctaattaggttctttaagttttctgattaaatttggttcatcaaattaattacaaagaaaaaagaa 15000031  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| |||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  15000030 ggaggattgataaagggtaataaaggaaaataatagattgtaataatcaaaatataaaatt 14999970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 119 - 277
Target Start/End: Original strand, 25472602 - 25472761
Alignment:
Q  119 ggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaag 217  Q
    ||||| |||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  25472602 ggtaagtcattaccataaatatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaag 25472701  T
Q  218 gagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  25472702 gagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatt 25472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 26827603 - 26827759
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    ||||||||| |||||||||||||||||||||||||||||||    
T  26827603 ttggtaactcatgaccataaacatttttcgagggctaatttggttcgttaagttt----attaaatttggttcatcaaattaattacaaagcaaaaagaa 26827698  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||| |||||||| |||||||||| ||  ||||||||||||||||||||    
T  26827699 ggagaattgataaaggacaataaagaaaaataatagattgtaataatcaaaatataaaatt 26827759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 277
Target Start/End: Original strand, 43664656 - 43664810
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 220  Q
    |||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43664656 taactcgtgaccataaacattttt-gggggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggag 43664754  T
Q  221 aattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| ||||| ||||||||||||||||||||| ||  ||||||||||||||||||||    
T  43664755 aatt-ataaaaggcaataaaggaaaataataggttgtaataatcaaaatataaaatt 43664810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 30825451 - 30825292
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  30825451 ttggtaactcatgaccataaacatttatcgggggataatttggttggttaagttttctgattaaatttggtt-atcaaattaattacaaaacaaaaagaa 30825353  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||| |||||||||| ||  |||||| ||||||| |||||    
T  30825352 ggagaattgataaagggcaataaagaaaaataataggttgtaataattaaaatattaaatt 30825292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 26826634 - 26826519
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  26826634 ttggtaactcatgaccataaacatttttcgggggctaatttggttcgttaagttttctgattaaatttggttcatcacattaattacaaagcaaaaagaa 26826535  T
Q  217 ggagaattgataaagg 232  Q
    ||||||||||||||||    
T  26826534 ggagaattgataaagg 26826519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 25970695 - 25970535
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||| |||||||| |||| |||||| |  |||||||||| |    |||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  25970695 ttggtaattcatgaccataaatattttttgatggctaatttgatctattaagttttctcattaaatttggttcatcaaattaataacaaagcaaaaagaa 25970596  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||    
T  25970595 ggagaattgataaagagcaataaaggaaaataataggttgtaataatcaaaatataaaatt 25970535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 45202707 - 45202573
Alignment:
Q  142 tttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaag 241  Q
    |||||||||||||||||||||  |||||||||||||| ||||  |||||| ||||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  45202707 tttcgggggctaatttggttctttaagttttctgatttaattg-gttcattaaattaatttcaaagcaaaaagaatgagaattgataaagaacaataaag 45202609  T
Q  242 gaaaataatagttttcaataatcaaaatataaaatt 277  Q
     |||||||||| ||  |||||| |||||||||||||    
T  45202608 aaaaataatagattgtaataattaaaatataaaatt 45202573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 47158059 - 47158219
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||| | |||| ||||| | || |||||||||||||| |||||||||| ||||||| | ||||||||||| ||| |||||||||||| ||    
T  47158059 ttggtaactcatgatcataaatatttt-ctggagctaatttggttcgttaagttttctaattaaatatggttcatcaaataaat-acaaagcaaaaaaaa 47158156  T
Q  217 g--gagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
       |||||||||||||||||||||||| |||||||||| ||  |||||| |||||||||||||    
T  47158157 aaagagaattgataaagggcaataaagaaaaataatagattataataataaaaatataaaatt 47158219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 274
Target Start/End: Original strand, 2000011 - 2000162
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 220  Q
    |||||||||||| |||| |||||| |||  ||||||||||||| ||| |||| |||||||||||  ||| ||||||||| |||||| ||||||||||||     
T  2000011 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 2000108  T
Q  221 aattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaa 274  Q
    | |||| |||||  |||||||||||||||| | ||  |||||||||||||||||    
T  2000109 atttgacaaaggataataaaggaaaataatgggttgtaataatcaaaatataaa 2000162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 32450982 - 32450853
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    |||| |||||||||||| ||| |||| | ||||||||| |||||||||||||| ||||||  ||||||||||| |||||||||||| || ||||| ||||    
T  32450982 ggggataatttggttcgttaaatttttt-attaaatttggttcatcaaattaaatacaaactaaaaagaaggataattgataaaggacagtaaagaaaaa 32450884  T
Q  247 taatagttttcaataatcaaaatataaaatt 277  Q
    |||| | ||  ||||||||||||||||||||    
T  32450883 taatgggttgtaataatcaaaatataaaatt 32450853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 37371260 - 37371181
Alignment:
Q  198 aattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||  ||||||||||||| ||||||    
T  37371260 aattgcaaagcaaaaagaaggagaattgataaagggcaataaaggaaaatcataagttgtaataatcaaaatagaaaatt 37371181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 277
Target Start/End: Original strand, 298500 - 298656
Alignment:
Q  121 taactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattaca--aagcaaaaagaagg 218  Q
    |||||||||||| |||| ||||| | || |||||||||| | | ||| |||| ||||||||||| |||||||||||||| |||   ||  ||||| ||||    
T  298500 taactcatgaccataaatatttt-ctggagctaatttggattgttaaattttttgattaaatttggttcatcaaattaaatacttcaaaaaaaaaaaagg 298598  T
Q  219 agaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||  ||||||| ||||||||| ||| | |||||| |||||||||||||    
T  298599 agaattgataaagaacaataaatgaaaataatggttgt-aataattaaaatataaaatt 298656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 47085524 - 47085682
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||  | ||  |||||||||||  ||| |||| ||||||||||| |||||||||||||| ||||||  ||||| ||    
T  47085524 ttggtaactcatgaccataaatattttatgaggt-taatttggttccataaattttttgattaaatttggttcatcaaattaaatacaaacaaaaaaaaa 47085622  T
Q  217 --ggagaattgataaagggcaataaaggaaaataat-agttttcaataatcaaaatataaa 274  Q
       ||||||||||||||| |||||||| |||||||| |||| | |||||| ||||||||||    
T  47085623 atagagaattgataaaggacaataaagaaaaataatgagttgt-aataattaaaatataaa 47085682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 25191727 - 25191831
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaa-agaaggagaattgataaagggcaataaaggaaa 245  Q
    |||| |||||||||||| ||| | || |||| || ||| ||||||| |||||| |||||| ||||| |||||||||||||||||||| ||||||| ||||    
T  25191727 ggggttaatttggttcgttaaatcttttgatcaactttggttcatcgaattaaatacaaaccaaaaaagaaggagaattgataaaggacaataaaagaaa 25191826  T
Q  246 ataat 250  Q
    |||||    
T  25191827 ataat 25191831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 47655723 - 47655884
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  47655723 ttggtaagtcatgaccataaatatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 47655822  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    | ||||||||||||||||||||||||||||||||||| ||  |||| |||||||| ||||||    
T  47655823 aagagaattgataaagggcaataaaggaaaataataggttgtaatagtcaaaatagaaaatt 47655884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 41512406 - 41512246
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||||||||| || |||| |||||  |||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||| |||||||||    
T  41512406 ttggtaactcatggccataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaactaaatacaaaacaaaaagaa 41512307  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||    
T  41512306 ggagaattgataaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatt 41512246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 44740407 - 44740247
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||  |||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  44740407 ttggtaactcatgacaataaatatttttcggaggctaatttggttcgttaagttttctgattaaatttggttcatcaagttaattacaaagcaaacagaa 44740308  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||| | ||||||||||||| ||  |||||| |||||||||||||    
T  44740307 ggagaattgataaagggcaaaataggaaaataataggttgtaataatgaaaatataaaatt 44740247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 46033513 - 46033673
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||  |||| |||||| |||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46033513 ttggtaactcatgacagtaaatattttttgggggctaatttggtttgttgagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 46033612  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||| |||||||||||||||||||  ||  ||||||||||||||| ||||    
T  46033613 ggagaattgataaagagcaataaaggaaaataatatgttgtaataatcaaaatatacaatt 46033673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 13509776 - 13509936
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| | |||||| | ||||||||| ||||||||| || ||||||||||||||||||    
T  13509776 ttggtaagtcatgaccataaacatttttcgggggctaatttggttcgttcagttttgtaattaaatttggttcatcaagttaaattacaaagcaaaaaga 13509875  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| |||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  13509876 agga-aattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatt 13509936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 134 - 267
Target Start/End: Complemental strand, 27416808 - 27416676
Alignment:
Q  134 taaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaaggg 233  Q
    ||||||||||||| || ||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27416808 taaacatttttcgagg-ctaatttggttcgttaaattttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggagaattgataaaggg 27416710  T
Q  234 caataaaggaaaataatagttttcaataatcaaa 267  Q
    ||||||||||||||||||| ||  ||||||||||    
T  27416709 caataaaggaaaataatagattgtaataatcaaa 27416676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 50031092 - 50030930
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggg-gctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaag 214  Q
    ||||||| |||||||| |||||||||||  ||  |||||||||||||| |||||||||| |||||||||  ||||||||||||| |||||||||||||||    
T  50031092 ttggtaagtcatgaccataaacatttttttggacgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaag 50030993  T
Q  215 aaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  50030992 aaggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatt 50030930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 24075752 - 24075624
Alignment:
Q  149 ggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 248  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  24075752 ggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaaatagaattgataaagggcaataaatgaaaata 24075653  T
Q  249 atagttttcaataatcaaaatataaaatt 277  Q
    |||| ||  ||||||||||||||||||||    
T  24075652 ataggttgtaataatcaaaatataaaatt 24075624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 275
Target Start/End: Original strand, 4485020 - 4485175
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||| |||||||| |||| |||||||||||||||||| | |||| |||||||||| ||||||||| ||||||||||||||||||||||||||   ||    
T  4485020 ttggtaaatcatgaccataaatatttttcgggggctaattagtttcgttaagttttctaattaaatttggttcatcaaattaattacaaagcaaa---aa 4485116  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaa 275  Q
    ||| ||||||||||||||||||||| |||||||||| |   ||||||||||||| ||||    
T  4485117 ggataattgataaagggcaataaagaaaaataataggtcgtaataatcaaaataaaaaa 4485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 42137537 - 42137697
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||| |||||  ||||| ||| |||||||| |||||||||||||||||||| ||| |||| ||||| ||||||||||||||||    
T  42137537 ttggtaactcatgaccataaatattttatgggggttaagttggttcgttaagttttctgattaaatttggtttatcagattaaatacaaagcaaaaagaa 42137636  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||| |  |||||||| ||||||||||  ||  |||||| |||||||||||||    
T  42137637 ggagaattgatacaaagcaataaatgaaaataataagttgtaataataaaaatataaaatt 42137697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 6706392 - 6706234
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||| ||  ||||   |    
T  6706392 ttggtaagtcatgaccataaacatttttcggaggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattataattcaaa---a 6706296  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||  ||||| ||||||    
T  6706295 aggagaattgataaagggcaataaaggaaaataataggttgtaataattgaaatagaaaatt 6706234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 11050936 - 11051093
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||| ||| |||| |||||||| ||||||||||| | |  ||| |||| ||| ||||||| ||||||||||||||||||||||||||    |    
T  11050936 ttggtaactcattaccataaatatttttcgagggctaatttgatccattaatttttttgaataaatttggttcatcaaattaattacaaagcaaa---ga 11051032  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||    
T  11051033 ggagaattgataaagggtaataaaggaaaataataatttataataatcaaaatataaaatt 11051093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 49430894 - 49430735
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||| |||||||||| |||| |||||||| | |||  ||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  49430894 ttggtgactcatgaccataaatatttttcgagagctggtttggttcgttaagttttttgattaaatttggttcattaaattaattacaaagcaaaaagaa 49430795  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    | |||| || |||||||||||||| ||||||||||  ||  |||||| |||||||||||||    
T  49430794 gaagaaatg-taaagggcaataaaagaaaataataaattgtaataataaaaatataaaatt 49430735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 1762478 - 1762347
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||||||||||||| ||| ||||| || || ||||||||||||| ||| |||| ||||  ||||| |||||||||||||| |||||| |||||||||    
T  1762478 ttggtaactcatgacct-aaatattttccgagg-ctaatttggttcgttaaattttttgatacaatttggttcatcaaattaaatacaaaccaaaaagaa 1762381  T
Q  217 ggagaattgataaagggcaataaaggaaaataat 250  Q
    |||||||||||||||| |||||||||||||||||    
T  1762380 ggagaattgataaaggacaataaaggaaaataat 1762347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 27067362 - 27067264
Alignment:
Q  152 taatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataat 250  Q
    ||||||| |||| ||| |||| | ||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||    
T  27067362 taatttgattcgttaattttttttattaaatttggttcatcaaattaaatacaaatcaaagagaaggagaattgataaaggacaataaaggaaaataat 27067264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 3850797 - 3850861
Alignment:
Q  213 agaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  3850797 agaaggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatt 3850861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 31100333 - 31100462
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    |||| ||||||| |||| ||| |||| ||||||||| | || ||| ||||||| |||||| ||||||||||||||||||||||||| | ||||||||||     
T  31100333 ggggttaatttgattcgttaaattttttgattaaatgtggtacattaaattaaatacaaaccaaaaagaaggagaattgataaaggaccataaaggaaa- 31100431  T
Q  247 taatagttttcaataatcaaaatataaaatt 277  Q
    |||| | |   ||||||||||||||||||||    
T  31100432 taatgggtagtaataatcaaaatataaaatt 31100462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 45179562 - 45179434
Alignment:
Q  148 gggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 247  Q
    ||||||||||||||||   | |||| |||||||||||  ||||||||||||| |||||| ||||||||| || ||||||| |||| ||| ||||||||||    
T  45179562 gggctaatttggttcgtagatttttttgattaaatttgattcatcaaattaaatacaaatcaaaaagaa-gataattgatgaaggacaacaaaggaaaat 45179464  T
Q  248 aatagttttcaataatcaaaatataaaatt 277  Q
    ||  | ||  |||||| |||||||||||||    
T  45179463 aacgggttctaataattaaaatataaaatt 45179434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 11051098 - 11051158
Alignment:
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||    
T  11051098 ggagaattgataaagggtaataaaggaaaataataatttgtaataatcaaaatataaaatt 11051158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 11829306 - 11829179
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 246  Q
    |||| |||||||||||| ||| |||| ||||||||||| |||| ||||||||| ||||||  ||||| ||    |||||||||||| |||||||||||||    
T  11829306 ggggttaatttggttcgttaaattttttgattaaatttggttcctcaaattaaatacaaaaaaaaaataaa---aattgataaaggacaataaaggaaaa 11829210  T
Q  247 taatagttttcaataatcaaaatataaaatt 277  Q
    |||| | ||  |||||  |||||||||||||    
T  11829209 taatgggttgtaataactaaaatataaaatt 11829179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 7385429 - 7385363
Alignment:
Q  166 aagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaag 231  Q
    ||||||||| |||||||||  ||||||||||||| |||||||| |||||||||||||||||||||||    
T  7385429 aagttttctaattaaatttgattcatcaaattaaattacaaagtaaaaagaaggagaattgataaag 7385363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 20473640 - 20473736
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaa 213  Q
    ||||||| ||||| || |||||| ||||  ||||||||||||||||   ||  ||| |||| |||||| |||||||||||||| |||||||||||||    
T  20473640 ttggtaaatcatggccataaacaattttttggggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 20557913 - 20557817
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaa 213  Q
    ||||||| ||||| || |||||| ||||  ||||||||||||||||   ||  ||| |||| |||||| |||||||||||||| |||||||||||||    
T  20557913 ttggtaaatcatggccataaacaattttttggggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20557817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 20364593 - 20364659
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaa 213  Q
    ||||||||||||||||   ||  ||| |||| |||||| |||||||||||||| |||||||||||||    
T  20364593 ggggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20364659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 20546318 - 20546252
Alignment:
Q  147 ggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaa 213  Q
    ||||||||||||||||   ||  ||| |||| |||||| |||||||||||||| |||||||||||||    
T  20546318 ggggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20546252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 37958 - 37797
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaaga 215  Q
    ||||||| || | ||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||| ||||||||    
T  37958 ttggtaagtcgttaccataaacatttttcggaggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaaacaaaaaga 37859  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  37858 aggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatt 37797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 117 - 275
Target Start/End: Complemental strand, 91798 - 91640
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    ||||||| |||||||| |||||| ||||  |||||| |||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  91798 ttggtaattcatgaccataaacactttttcggggctgatttggttcgttaaattttctgaataaatttggttcatcaaattaattacaaagcaaaaagaa 91699  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaa 275  Q
    |||||||||||||| | ||||||||||||||||||| ||  ||||||||||||||||||    
T  91698 ggagaattgataaaagacaataaaggaaaataataggttgtaataatcaaaatataaaa 91640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 4350 - 4192
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||  ||||   |    
T  4350 ttggtaagtcatgaccataaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaattcaaa---a 4254  T
Q  216 aggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||| |||||| ||||||    
T  4253 aggagaattgataaagggcaataaaggaaaataataggttgtaataataaaaatagaaaatt 4192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 117 - 275
Target Start/End: Complemental strand, 17073 - 16919
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 216  Q
    |||||||||||||||| |||||| ||||  ||||||||||||||||| ||||||| || | ||||||| |||||||||||||||||||| ||||||||||    
T  17073 ttggtaactcatgaccataaacactttttcggggctaatttggttcgttaagtttcctaaataaatttggttcatcaaattaattacaacgcaaaaagaa 16974  T
Q  217 ggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaa 275  Q
    |||||||||||||| | |||||||||    |||||| ||  ||||||||||||||||||    
T  16973 ggagaattgataaaagacaataaagg----taataggttgtaataatcaaaatataaaa 16919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 20838366 - 20838487
Alignment:
Q  152 taatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataata 251  Q
    |||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| |||||    
T  20838366 taatttagttcgttaagttttttgattaaatttggttcatcaaattaaatacaaagcaaaaagaatgtgaattgataaagagcaataaaggaaactaata 20838465  T
Q  252 gttttcaataatcaaaatataa 273  Q
    | |   ||||||||||||||||    
T  20838466 ggtcgtaataatcaaaatataa 20838487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 27825261 - 27825128
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctg-attaaattttgttcatcaaattaattacaaagcaaaaaga 215  Q
    |||||||||| ||||| |||| |||||| | || ||||||||||||| ||| |||| || ||||||||| |||||||||||||| ||||||  |||||||    
T  27825261 ttggtaactcctgaccataaatattttttgtgg-ctaatttggttcgttaaattttttggattaaatttggttcatcaaattaaatacaaacgaaaaaga 27825163  T
Q  216 aggagaattgataaagggcaataaaggaaaataat 250  Q
    ||||||||||||||||  |||||||||||||||||    
T  27825162 aggagaattgataaagaacaataaaggaaaataat 27825128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 365801 - 365731
Alignment:
Q  176 attaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaa 245  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  365801 attaaatttggttcatcaaattaaattacaaagcaaaaagaagcagaattgataaaaggcaataaaggaaa 365731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 30134374 - 30134249
Alignment:
Q  148 gggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 247  Q
    |||||||||||||  | ||| |||| ||||||||||| ||| |||||||||| |||||| |||||||   || ||||||| |||| ||||||||||||||    
T  30134374 gggctaatttggtatgttaacttttttgattaaatttggtttatcaaattaaatacaaa-caaaaag---gataattgatgaaggacaataaaggaaaat 30134279  T
Q  248 aatagttttcaataatcaaaatataaaatt 277  Q
    ||||| ||  |||||| |||||||||||||    
T  30134278 aataggttgtaataattaaaatataaaatt 30134249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 10683417 - 10683304
Alignment:
Q  117 ttggtaactcatgaccttaaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaatt-aattacaaagcaaaaaga 215  Q
    ||||||| |||| ||| ||||||||| ||||||| |||||||||| | ||| |||||| ||||||||| |||||||||||| ||||||||  ||||   |    
T  10683417 ttggtaagtcattaccataaacatttatcgggggttaatttggtttgttaaattttctaattaaatttggttcatcaaattaaattacaattcaaa---a 10683321  T
Q  216 aggagaattgataaagg 232  Q
    |||||||||||||||||    
T  10683320 aggagaattgataaagg 10683304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 4146967 - 4146913
Alignment:
Q  223 ttgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||||||||| ||||||||||||||||| | ||  ||||||||||||||||||||    
T  4146967 ttgataaaggacaataaaggaaaataatgggttgtaataatcaaaatataaaatt 4146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 9601 - 9690
Alignment:
Q  188 tcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaataatagttttcaataatcaaaatataaaatt 277  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||    
T  9601 tcatgaaattaaatacgaagcaaaaagaaggagaattgataaagggcaataaagaaaaataatagattgtaataatcaaaatataaaatt 9690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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