View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17060_low_16 (Length: 249)

Name: NF17060_low_16
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17060_low_16
NF17060_low_16
[»] chr3 (17 HSPs)
chr3 (101-224)||(30489533-30489656)
chr3 (101-219)||(30520352-30520470)
chr3 (1-61)||(30489433-30489493)
chr3 (104-224)||(30505370-30505497)
chr3 (145-219)||(30516177-30516247)
chr3 (19-61)||(30520270-30520312)
chr3 (104-204)||(30522226-30522328)
chr3 (19-61)||(30516051-30516093)
chr3 (146-220)||(30525282-30525356)
chr3 (104-190)||(30487388-30487476)
chr3 (104-202)||(30503504-30503604)
chr3 (19-61)||(30505285-30505327)
chr3 (151-220)||(30487747-30487815)
chr3 (160-220)||(30491711-30491771)
chr3 (117-185)||(30449815-30449885)
chr3 (151-202)||(30483464-30483515)
chr3 (26-59)||(8411988-8412021)
[»] chr5 (2 HSPs)
chr5 (112-196)||(38510667-38510755)
chr5 (153-196)||(38511496-38511539)
[»] chr4 (1 HSPs)
chr4 (103-172)||(38995191-38995262)
[»] chr2 (1 HSPs)
chr2 (151-194)||(29265475-29265518)
[»] chr6 (2 HSPs)
chr6 (150-194)||(6171749-6171793)
chr6 (114-179)||(10594338-10594404)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 30489533 - 30489656
Alignment:
Q  101 acagtcccatcaaattgaattgggatttttcccgaagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 200  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489533 acagtcccatcaaattgaattgggttttttaccgcagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 30489632  T
Q  201 attaataacttatttgtttttaaa 224  Q
    ||||||||||||||||||||||||    
T  30489633 attaataacttatttgtttttaaa 30489656  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 30520352 - 30520470
Alignment:
Q  101 acagtcccatcaaattgaattgggatttttcccgaagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 200  Q
    |||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30520352 acagtcccttcaaattgaattgggttttttcctgcagtgacagatttcataatttacacttgatatgagcccctcaaccttctgaccttccattattatg 30520451  T
Q  201 attaataacttatttgttt 219  Q
    |||||||||||||||||||    
T  30520452 attaataacttatttgttt 30520470  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30489433 - 30489493
Alignment:
Q  1 ttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489433 ttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 30489493  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 30505370 - 30505497
Alignment:
Q  104 gtcccatcaaattgaattgggatttttcccgaagtgacaga--tttcataatttacacttgatatgagcccctcaaccttctgactttcc------atta 195  Q
    ||||| ||| ||||||||||| |||||||  | ||||||||  |||| ||||||||||||||||||||||||||||| |||||| |||||      ||||    
T  30505370 gtcccttcatattgaattgggttttttccaca-gtgacagagctttcttaatttacacttgatatgagcccctcaactttctgattttccatcattatta 30505468  T
Q  196 ttatgattaataacttatttgtttttaaa 224  Q
    |||| |||| |||||||||||||||||||    
T  30505469 ttattattattaacttatttgtttttaaa 30505497  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 30516177 - 30516247
Alignment:
Q  145 tttcataatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgttt 219  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||   |||||||||||    
T  30516177 tttcataatttacacttgatatgagccc-tcaaccttctgattttccattattattattaa---cttatttgttt 30516247  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 30520270 - 30520312
Alignment:
Q  19 ccatacccttttcaccaaaggggtttggctttggcatctcata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30520270 ccatacccttttcaccaaaggggtttggctttggcatctcata 30520312  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 30522226 - 30522328
Alignment:
Q  104 gtcccatcaaattgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctgactttccattattatga 201  Q
    ||||| ||||||||||||  | |||| |||  ||||||||||  |||| ||||||||||||||||||||||||| | ||||||| |||| ||| ||||||    
T  30522226 gtcccttcaaattgaattcaggttttccccacagtgacagatctttcaaaatttacacttgatatgagcccctcgatcttctgattttctatttttatga 30522325  T
Q  202 tta 204  Q
    |||    
T  30522326 tta 30522328  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 30516051 - 30516093
Alignment:
Q  19 ccatacccttttcaccaaaggggtttggctttggcatctcata 61  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  30516051 ccatacccttttcaccaaaggggtttggctttggtatctcata 30516093  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 30525282 - 30525356
Alignment:
Q  146 ttcataatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 220  Q
    |||| |||| |||||||||||||||||||||||||||||| |||  ||| || |||||| |||||| ||||||||    
T  30525282 ttcacaattcacacttgatatgagcccctcaaccttctgattttatattgttttgattattaacttttttgtttt 30525356  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 190
Target Start/End: Original strand, 30487388 - 30487476
Alignment:
Q  104 gtcccatcaaattgaattgggatttttcccgaagtgacaga--tttcataatttacacttgatatgagcccctcaaccttctgactttc 190  Q
    ||||| |||||||| |||||| |||||||   |||| ||||  ||||||||||||  ||||||||||||||||||||||||||| ||||    
T  30487388 gtcccttcaaattggattgggttttttcctacagtggcagagctttcataatttatccttgatatgagcccctcaaccttctgattttc 30487476  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 30503504 - 30503604
Alignment:
Q  104 gtcccatcaaattgaattgggatttttcccgaagtgacagattt--cataatttacacttgatatgagcccctcaaccttctgactttccattattatga 201  Q
    ||||| ||||||||||||||  |||||||   ||||| |||| |  || ||||||||||| ||||||||||||||||||||| | |||||||| ||||||    
T  30503504 gtcccttcaaattgaattggattttttcctacagtgatagatctatcaaaatttacacttcatatgagcccctcaaccttctcattttccattcttatga 30503603  T
Q  202 t 202  Q
    |    
T  30503604 t 30503604  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 30505285 - 30505327
Alignment:
Q  19 ccatacccttttcaccaaaggggtttggctttggcatctcata 61  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  30505285 ccatacccttttcaccaaaagggtctggctttggcatctcata 30505327  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 30487747 - 30487815
Alignment:
Q  151 aatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 220  Q
    ||||||||||||||||||||||||||||||||| | |||| ||| || ||| || |||||| ||||||||    
T  30487747 aatttacacttgatatgagcccctcaaccttcttattttcaatttttgtgactattaactt-tttgtttt 30487815  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 30491711 - 30491771
Alignment:
Q  160 ttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 220  Q
    ||||||||||||||| |||||||||| |||  ||| ||||||||| |||||| ||||||||    
T  30491711 ttgatatgagccccttaaccttctgattttatattgttatgattattaacttttttgtttt 30491771  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 30449815 - 30449885
Alignment:
Q  117 gaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctga 185  Q
    |||||||| ||||||||  ||||| ||||  |||| | |||||||||||||||||||||||||| ||||||    
T  30449815 gaattgggttttttcccacagtgatagatctttcaaattttacacttgatatgagcccctcaacattctga 30449885  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 30483464 - 30483515
Alignment:
Q  151 aatttacacttgatatgagcccctcaaccttctgactttccattattatgat 202  Q
    ||||||||||| ||||||||||||||||||||| | |||  |||||||||||    
T  30483464 aatttacacttcatatgagcccctcaaccttctcattttttattattatgat 30483515  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 8412021 - 8411988
Alignment:
Q  26 cttttcaccaaaggggtttggctttggcatctca 59  Q
    ||||||||||||||||||||||||||| ||||||    
T  8412021 cttttcaccaaaggggtttggctttggtatctca 8411988  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 38510667 - 38510755
Alignment:
Q  112 aaattgaattgggattttt--cccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctgactttccattat 196  Q
    ||||||||||||| |||||  |||  ||||||||||  |||| |||||||||||||||||||||||||||||| |||| |||| |||||    
T  38510667 aaattgaattgggttttttttcccacagtgacagatctttcaaaatttacacttgatatgagcccctcaacctactgattttctattat 38510755  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 38511496 - 38511539
Alignment:
Q  153 tttacacttgatatgagcccctcaaccttctgactttccattat 196  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  38511496 tttacacttgatatgagcccctcaaccttctgattttctattat 38511539  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 38995262 - 38995191
Alignment:
Q  103 agtcccatcaaattgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagccc 172  Q
    |||||| ||||||||||||||| ||||||||   |||||||||  |||| ||||||||||||||||||||||    
T  38995262 agtcccttcaaattgaattgggttttttcccactgtgacagatctttcaaaatttacacttgatatgagccc 38995191  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 29265475 - 29265518
Alignment:
Q  151 aatttacacttgatatgagcccctcaaccttctgactttccatt 194  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  29265475 aatttacacttgatatgagcccctcaaccttctcattttccatt 29265518  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 6171749 - 6171793
Alignment:
Q  150 taatttacacttgatatgagcccctcaaccttctgactttccatt 194  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  6171749 taatttactcttgatatgagaccctccaccttctgattttccatt 6171793  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 10594338 - 10594404
Alignment:
Q  114 attgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaacc 179  Q
    ||||||||||| |||||||   ||||||||||  |||| |||||||||||||||||||||| ||||||    
T  10594338 attgaattggg-tttttcctacagtgacagatctttcaaaatttacacttgatatgagcccttcaacc 10594404  T

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