View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_19 (Length: 241)
Name: NF17060_low_19
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30489187 - 30488959
Alignment:
| Q |
1 |
catgtaaaacttgctatcaatataaac-----cttgcttgcagattataaaaagaatacattggttaaattctgcacaacaaacaattcttgtactgtaa |
95 |
Q |
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| T |
30489187 |
catgtaaaacttgctatcaatataaactacttcttgcttgcagattataaaaagaatacattggttaaattctgcacaacaaacaattcttgtactgtaa |
30489088 |
T |
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| Q |
96 |
ccatagttgctgcatacaggtgacaagcnnnnnnngaatctgaaaacaaatcgaagacaaataaagatatccaacttcggttctcacatcagccaaaacc |
195 |
Q |
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| T |
30489087 |
ccatagttgctgcatacaggtgacaagcaaaaaaagaatctgaaaacaaatcgaagacaaataaagatatccaacttcggttctcacatcagccaaaacc |
30488988 |
T |
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| Q |
196 |
tattttgacttggtccattctagagattc |
224 |
Q |
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| T |
30488987 |
tattttgacttggtccattctagagattc |
30488959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 30520009 - 30519937
Alignment:
| Q |
46 |
aaagaatacattggttaaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcatacaggtga |
118 |
Q |
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| T |
30520009 |
aaagaatacattggttaaattatgcacaacaaactattcctgtactgtaaccatagttgctgcatccaggtga |
30519937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 30456079 - 30456019
Alignment:
| Q |
62 |
aaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcatacaggtgacaag |
122 |
Q |
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| T |
30456079 |
aaattctgcacaacaaactatttttgtactgtaaccatagttgctgcattcgggtgacaag |
30456019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 30482791 - 30482738
Alignment:
| Q |
58 |
ggttaaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcata |
111 |
Q |
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| T |
30482791 |
ggttaaattcggcacaacaaactattcttgtattgtaaccatagttgctacata |
30482738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 30519821 - 30519777
Alignment:
| Q |
180 |
cacatcagccaaaacctattttgacttggtccattctagagattc |
224 |
Q |
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| T |
30519821 |
cacatcagccaaaacctaatttgacttgatccattctagagattc |
30519777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 30484747 - 30484706
Alignment:
| Q |
180 |
cacatcagccaaaacctattttgacttggtccattctagaga |
221 |
Q |
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| T |
30484747 |
cacatcagccaaaacctatttttacttcatccattctagaga |
30484706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 30485454 - 30485406
Alignment:
| Q |
61 |
taaattctgcacaacaaacaattcttgtactgtaaccatagttgctgcat |
110 |
Q |
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| T |
30485454 |
taaattctgcacaacaaactattc-tatactgtaaccatagttgatgcat |
30485406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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