View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17060_low_2 (Length: 480)

Name: NF17060_low_2
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17060_low_2
NF17060_low_2
[»] chr1 (30 HSPs)
chr1 (204-464)||(8944280-8944540)
chr1 (4-190)||(13509918-13510104)
chr1 (21-185)||(35604753-35604917)
chr1 (21-186)||(46406359-46406524)
chr1 (8-190)||(47655870-47656052)
chr1 (11-171)||(6706085-6706245)
chr1 (56-190)||(50030771-50030905)
chr1 (4-153)||(44740117-44740265)
chr1 (4-143)||(11051140-11051279)
chr1 (10-154)||(11829048-11829191)
chr1 (4-117)||(7385232-7385345)
chr1 (17-142)||(4485174-4485299)
chr1 (26-124)||(15353306-15353404)
chr1 (26-124)||(26821460-26821558)
chr1 (26-124)||(36496081-36496179)
chr1 (26-124)||(38627616-38627714)
chr1 (26-124)||(38843229-38843327)
chr1 (26-124)||(50979265-50979363)
chr1 (29-124)||(7593236-7593331)
chr1 (26-124)||(5271533-5271631)
chr1 (62-144)||(46033717-46033799)
chr1 (26-124)||(51488525-51488623)
chr1 (26-122)||(27000296-27000392)
chr1 (4-72)||(31100444-31100512)
chr1 (26-124)||(27575973-27576071)
chr1 (4-91)||(3850843-3850930)
chr1 (4-70)||(24075576-24075642)
chr1 (14-91)||(1762251-1762328)
chr1 (4-37)||(11051075-11051108)
chr1 (4-72)||(42137679-42137747)
[»] chr2 (21 HSPs)
chr2 (3-191)||(37640738-37640926)
chr2 (4-191)||(7473451-7473638)
chr2 (4-190)||(17480748-17480934)
chr2 (21-186)||(13892690-13892855)
chr2 (21-186)||(14032815-14032980)
chr2 (4-190)||(43342255-43342440)
chr2 (4-190)||(35458163-35458349)
chr2 (21-186)||(14033310-14033475)
chr2 (4-191)||(37996652-37996838)
chr2 (4-142)||(3739026-3739163)
chr2 (26-124)||(2443695-2443793)
chr2 (26-124)||(14379738-14379836)
chr2 (26-124)||(31686817-31686915)
chr2 (26-124)||(31786777-31786875)
chr2 (26-124)||(40254422-40254520)
chr2 (26-124)||(44282572-44282670)
chr2 (4-90)||(33598093-33598179)
chr2 (4-72)||(43695016-43695084)
chr2 (4-72)||(44002699-44002767)
chr2 (11-59)||(32497194-32497242)
chr2 (4-90)||(37551592-37551678)
[»] chr5 (26 HSPs)
chr5 (4-191)||(41040114-41040301)
chr5 (4-190)||(31905364-31905550)
chr5 (6-190)||(41742202-41742386)
chr5 (21-186)||(21022627-21022792)
chr5 (21-186)||(27739346-27739511)
chr5 (21-186)||(33229142-33229307)
chr5 (21-190)||(7073270-7073439)
chr5 (17-190)||(37066550-37066723)
chr5 (21-186)||(39236891-39237056)
chr5 (21-170)||(21022036-21022185)
chr5 (4-190)||(19356434-19356621)
chr5 (4-164)||(8958481-8958640)
chr5 (4-191)||(53645-53831)
chr5 (4-191)||(11018407-11018593)
chr5 (4-153)||(2526256-2526403)
chr5 (26-124)||(29542471-29542569)
chr5 (80-142)||(32872636-32872698)
chr5 (26-124)||(3260868-3260966)
chr5 (26-124)||(14082891-14082989)
chr5 (26-124)||(33115034-33115132)
chr5 (26-124)||(42663434-42663532)
chr5 (4-90)||(29367436-29367522)
chr5 (4-91)||(10900165-10900252)
chr5 (4-91)||(40979452-40979539)
chr5 (4-91)||(19375384-19375471)
chr5 (4-91)||(33387674-33387761)
[»] chr8 (16 HSPs)
chr8 (4-190)||(35802322-35802508)
chr8 (4-190)||(8416596-8416782)
chr8 (4-190)||(45276381-45276567)
chr8 (4-191)||(36821605-36821791)
chr8 (4-190)||(22936548-22936734)
chr8 (10-153)||(33165762-33165905)
chr8 (4-191)||(35164359-35164540)
chr8 (21-186)||(44238789-44238941)
chr8 (4-153)||(924073-924221)
chr8 (26-124)||(30210472-30210570)
chr8 (26-124)||(30984331-30984429)
chr8 (26-124)||(34774377-34774475)
chr8 (4-70)||(13015733-13015799)
chr8 (52-124)||(629480-629552)
chr8 (4-91)||(3590107-3590194)
chr8 (4-91)||(2025546-2025633)
[»] chr3 (26 HSPs)
chr3 (6-191)||(45150531-45150716)
chr3 (4-190)||(48254482-48254668)
chr3 (21-184)||(31813341-31813504)
chr3 (4-142)||(28182352-28182490)
chr3 (4-191)||(48181003-48181189)
chr3 (4-190)||(39251410-39251596)
chr3 (4-104)||(11263711-11263811)
chr3 (4-191)||(42074326-42074512)
chr3 (4-142)||(51229709-51229847)
chr3 (17-142)||(42274500-42274625)
chr3 (4-142)||(33025776-33025914)
chr3 (4-190)||(53687355-53687540)
chr3 (102-191)||(11257758-11257847)
chr3 (4-191)||(51407398-51407584)
chr3 (26-124)||(51129044-51129142)
chr3 (26-124)||(47141431-47141529)
chr3 (26-124)||(47697077-47697175)
chr3 (4-91)||(44610802-44610889)
chr3 (4-90)||(21985400-21985486)
chr3 (26-124)||(52692005-52692103)
chr3 (4-111)||(40237312-40237419)
chr3 (26-100)||(1527633-1527707)
chr3 (4-40)||(28883774-28883810)
chr3 (4-91)||(41535847-41535934)
chr3 (26-95)||(38469175-38469244)
chr3 (4-88)||(39267534-39267618)
[»] chr4 (27 HSPs)
chr4 (4-196)||(38767720-38767911)
chr4 (4-191)||(22606338-22606525)
chr4 (21-191)||(52058247-52058417)
chr4 (4-173)||(30418375-30418545)
chr4 (4-164)||(53404089-53404249)
chr4 (4-190)||(28963846-28964032)
chr4 (4-191)||(53663613-53663799)
chr4 (4-153)||(49723755-49723903)
chr4 (59-173)||(48406927-48407041)
chr4 (4-142)||(45105789-45105926)
chr4 (4-190)||(29386014-29386195)
chr4 (4-191)||(26457046-26457231)
chr4 (4-143)||(28911562-28911701)
chr4 (26-124)||(51834248-51834346)
chr4 (26-124)||(18140452-18140550)
chr4 (26-124)||(24038091-24038189)
chr4 (26-124)||(24246618-24246716)
chr4 (26-124)||(31431065-31431163)
chr4 (26-124)||(49127665-49127763)
chr4 (4-91)||(5937821-5937908)
chr4 (4-91)||(16203072-16203159)
chr4 (26-124)||(39382987-39383085)
chr4 (4-91)||(39732843-39732930)
chr4 (4-91)||(50523849-50523936)
chr4 (4-38)||(48407038-48407072)
chr4 (4-73)||(51677153-51677222)
chr4 (4-73)||(8503819-8503888)
[»] scaffold0068 (1 HSPs)
scaffold0068 (4-190)||(37631-37815)
[»] chr7 (21 HSPs)
chr7 (4-190)||(25472743-25472929)
chr7 (4-153)||(25970404-25970553)
chr7 (21-186)||(12909167-12909332)
chr7 (4-165)||(37371038-37371199)
chr7 (4-142)||(14999850-14999988)
chr7 (4-142)||(30825172-30825310)
chr7 (4-184)||(30139807-30139987)
chr7 (4-153)||(26826353-26826502)
chr7 (4-153)||(43664792-43664940)
chr7 (4-143)||(39857058-39857197)
chr7 (26-124)||(25341474-25341572)
chr7 (26-124)||(31012432-31012530)
chr7 (26-124)||(41064609-41064707)
chr7 (4-53)||(26827741-26827790)
chr7 (4-87)||(298638-298721)
chr7 (4-91)||(32450784-32450871)
chr7 (18-91)||(19544572-19544645)
chr7 (4-141)||(45202454-45202591)
chr7 (4-90)||(4035492-4035578)
chr7 (14-88)||(39958411-39958485)
chr7 (4-73)||(2000147-2000215)
[»] chr6 (8 HSPs)
chr6 (4-190)||(365525-365711)
chr6 (21-186)||(21517352-21517517)
chr6 (4-168)||(10683125-10683287)
chr6 (4-153)||(4146784-4146931)
chr6 (25-124)||(31746188-31746287)
chr6 (26-124)||(30018851-30018949)
chr6 (4-91)||(20838473-20838560)
chr6 (4-91)||(30134180-30134267)
[»] scaffold0808 (1 HSPs)
scaffold0808 (4-190)||(4025-4210)
[»] scaffold0097 (1 HSPs)
scaffold0097 (4-166)||(33040-33202)
[»] scaffold0006 (1 HSPs)
scaffold0006 (4-191)||(91468-91656)
[»] scaffold0069 (1 HSPs)
scaffold0069 (4-191)||(16749-16935)
[»] scaffold0184 (1 HSPs)
scaffold0184 (4-72)||(9672-9740)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 204 - 464
Target Start/End: Original strand, 8944280 - 8944540
Alignment:
Q  204 tagtaaaaaattctccggtcatacacttatttgaagcccaccttcaaaaataaagcattctttaatataatttttagctagctctatgaattcattcact 303  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8944280 tagtaaaaaattctccggtcatacacttatttgaagcccaccttaaaaaataaagcattctttaatataatttttagctagctctatgaattcattcact 8944379  T
Q  304 actagcaccccacaaattaatttcctacctttggtaaatgcatactaacgagaggagattagatgattggtaattacagtcaaccttcctgtcaaaacct 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8944380 actagcaccccacaaattaatttcctacctttggtaaatgcatactaacgagaggagattagatgattgataattacagtcaaccttcctgtcaaaacct 8944479  T
Q  404 tagccactaatttgtacaaataccaaataagagcgatggtacaaataaacaagttaatatt 464  Q
    || ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  8944480 taaccactaatttgtacaaacaccaaataagagcgttggtacaaataaacaagttactatt 8944540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 13509918 - 13510104
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | |||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  13509918 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagctaggatttatagctttaaggataattgcttttggaggatagaatcaat 13510017  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||||| ||| ||||||||||| |||||||| |||||||||||||||  ||||||||||| |||||  || ||||||||||||    
T  13510018 tcttaaaagctaaaccaaacaccattaaaaactcagtttttcacttttgaaggttgtagaatcatttcttgatgttgaaaagccaaa 13510104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 35604917 - 35604753
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   |||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  35604917 tttaatgtagaattgattctacaaaagtcaaaagctaatatttgtagcttcaaggataattgtttttggaggatagaagcaattcttaaaagtcaaatca 35604818  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaag 185  Q
    |||||||||||||||||| ||||||||||||||   ||||||||||||||||| |||||||||||    
T  35604817 aacaccattgaaaactcagtttttcacttttgagggttgtagaatcacttcttggtgctgaaaag 35604753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 46406524 - 46406359
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||    
T  46406524 tttaatgtagaattgattctacaaaagccaaaagctaagatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaacca 46406425  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||| ||||||||||||||  |||||||||||||||||  || ||||||||    
T  46406424 aacaccattgaaaattcaacttttcacttttgaaggttgtagaatcacttcttgatggtgaaaagc 46406359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 47655870 - 47656052
Alignment:
Q  8 tcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattctt 107  Q
    |||||||| |||||||||||||||||||||||| | ||||  | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  47655870 tcaaaatagaaaatttaatgtagaattgattctagaaaagttagaagctaggatttgtagctttaaggataattgcttttggaggatagaatcaattctt 47655969  T
Q  108 aaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||||| |||||| |||| |||||||| ||  ||||||||||   ||||| ||||||||||| ||| ||||||||||||    
T  47655970 aaaagccaaaccaaacatcattaaaaactcagttagtcacttttgagggttgtataatcacttcttggtgttgaaaagccaaa 47656052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 6706245 - 6706085
Alignment:
Q  11 aaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaa 110  Q
    ||||| |||||||||||||||||||||||| | ||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  6706245 aaatagaaaatttaatgtagaattgattctagaaaagctagaagctaggatttgtagctttaaggataattgtttttggaggatagaatcaattcttaaa 6706146  T
Q  111 agccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttc 171  Q
    |||||||  |||||||||| |||| |||||||||||||||| || |||||||||| |||||    
T  6706145 agccaaactaaacaccattaaaaattcaatttttcacttttaaagattgtagaattacttc 6706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 50030905 - 50030771
Alignment:
Q  56 taggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaa 155  Q
    |||||||| |||||| || |||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||| |||||||||||| ||     
T  50030905 taggatttatagctttaaagataattgtttttggaggatagaatcaattcttaaaacccaaaccaaacaccattgaaaattcagtttttcacttttaaag 50030806  T
Q  156 attgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||| |||||||| || ||||||||||||||||    
T  50030805 attgtataatcactttttggtgctgaaaagccaaa 50030771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 44740265 - 44740117
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| |||||||||||||||| ||||||||||||||  |||| |||||||||| || ||||||||  ||||| | || ||| |||| ||||||| ||||    
T  44740265 ataatgaaaatataaaatttaacgtagaattgattctatgaaaaccaaaagctatgaattgtagctataaggagagtttcttatggaagatagaaacaat 44740166  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    ||||||||| |||| |||||||||||| ||||||||| ||||||||||||    
T  44740165 tcttaaaaggcaaaccaaacaccattg-aaactcaatctttcacttttga 44740117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 11051140 - 11051279
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||| |||||||||||| |   | ||||||| ||||| |||||| |||||  ||||||| ||||||||||||||||||||    
T  11051140 ataatcaaaatataaaatttaatggagaattgattctagtttacccaaaagttaggaattgtagattcaaccataattgtttttggaggatagaagcaat 11051239  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttt 143  Q
    | | ||||| |||| ||||||  |||||||||||||||||    
T  11051240 tttgaaaagtcaaaccaaacatgattgaaaactcaatttt 11051279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 11829191 - 11829048
Alignment:
Q  10 aaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaa 109  Q
    |||||||||||||||||| |||||||||||| |  ||  |||||| ||||| || || |||||   | ||||||||||||||||||||||||||||||||    
T  11829191 aaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattataccttcatccagaattgcttttggaggatagaagcaattcttaa 11829092  T
Q  110 aagccaaatcaaacaccattgaaaactcaatttttcacttttgaa 154  Q
    ||| |||| ||||||  ||||||||||||| ||||||||||||||    
T  11829091 aaggcaaaccaaacatgattgaaaactcaa-ttttcacttttgaa 11829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 7385345 - 7385232
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||| | ||  ||||||||||||||| || |||||||||||||| |||||||||  |||    
T  7385345 ataatcaaaataaaaaatttaatgtaaaattgattctaggaaagctagaaattaggatttgtagctttaaagataattgcttttgaaggatagaattaat 7385246  T
Q  104 tcttaaaagccaaa 117  Q
    ||||||||| ||||    
T  7385245 tcttaaaagtcaaa 7385232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 4485174 - 4485299
Alignment:
Q  17 aaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaa 116  Q
    |||| |||||||| |||||||||| ||||||||||||| ||| | |||||| || ||||| ||||| ||||||||||||||| ||| ||| ||| | | |    
T  4485174 aaaaattaatgtataattgattctaggaaagccaaaagttagaaattgtagttttaaggagaattgtttttggaggatagaatcaactctaaaatgtcta 4485273  T
Q  117 atcaaacaccattgaaaactcaattt 142  Q
    | ||||||  ||||||||||||||||    
T  4485274 accaaacaatattgaaaactcaattt 4485299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 15353404 - 15353306
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  15353404 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 15353306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 26821558 - 26821460
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  26821558 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 26821460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 36496081 - 36496179
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  36496081 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 36496179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 38627714 - 38627616
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  38627714 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 38627616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 38843327 - 38843229
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  38843327 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 38843229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 50979265 - 50979363
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  50979265 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 50979363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 7593236 - 7593331
Alignment:
Q  29 agaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    |||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  7593236 agaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 7593331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 5271533 - 5271631
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||| ||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  5271533 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 5271631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 46033717 - 46033799
Alignment:
Q  62 ttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaacaccattgaaaactcaattttt 144  Q
    ||||| |||||| || ||||| ||||| ||||||||||||||| | ||||| |||||||||||  ||||||||||||||||||    
T  46033717 ttgtaacttcaatgagaattgtttttgaaggatagaagcaattttgaaaagtcaaatcaaacatgattgaaaactcaattttt 46033799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 51488525 - 51488623
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||| ||||||    
T  51488525 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagtcaaaccaaaca 51488623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 27000296 - 27000392
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaa 122  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| || | ||| | |||||||||| ||||    
T  27000296 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaaactattttgaaaagccaaaccaaa 27000392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 31100444 - 31100512
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttca 72  Q
    |||||||||||||||||||||||| |||||||||||| |  ||  |||||||||||| |||||||||||    
T  31100444 ataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattgtagcttca 31100512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 27576071 - 27575973
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| | |||| || ||||||  | ||||| ||| | ||| ||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  27576071 tgtagaattgattctagaaaagtcagaagctaaaaattgtaactttatggagaattgcttttggaggatagaagcaattatgaaaagtcaaaccaaaca 27575973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 3850843 - 3850930
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||||||| | |||||||||||   |||||||| |||||||    
T  3850843 ataatcaaaatataaaatttattggagaattgattctagataactcaaaagctagaaattgtagcttcattcataattgcctttggag 3850930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 24075642 - 24075576
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagctt 70  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||| ||||| |||||||||    
T  24075642 ataatcaaaatataaaatttattggagaattgattctagttaaatcaaaagttaggaattgtagctt 24075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 1762328 - 1762251
Alignment:
Q  14 tataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    |||||||||||||  |||||||||||| | |||   ||||| ||||| ||||||||||||  | ||||||||||||||    
T  1762328 tataaaatttaatagagaattgattctagtaaacttaaaagttaggaattgtagcttcaaccagaattgcttttggag 1762251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 11051075 - 11051108
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgat 37  Q
    |||||||||||||||||||||||| |||||||||    
T  11051075 ataatcaaaatataaaatttaatggagaattgat 11051108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 42137679 - 42137747
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttca 72  Q
    ||||| ||||||||||||||| || |||||||||||| |  ||  |||||||||||| |||||| ||||    
T  42137679 ataataaaaatataaaatttattggagaattgattctagttaactcaaaagctaggaattgtagattca 42137747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 7e-81; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 37640738 - 37640926
Alignment:
Q  3 gataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaa 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37640738 gataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaagatttgtagcttcaaggataattgcttttggaggatagaagcaa 37640837  T
Q  103 ttcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||||| ||||||||| |||||||||||||||||||||||||||| ||||||   ||||||||||||||||| |||||||||||||||||    
T  37640838 ttcttgaaagccaaaccaaacaccattgaaaactcaatttttcatttttgagggttgtagaatcacttcttggtgctgaaaagccaaaa 37640926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 7473638 - 7473451
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7473638 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagttaggatttgtagcttcaaggataattgtttttggaggatagaagcaat 7473539  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||   ||||||||| |||||||| | ||||| ||||||||    
T  7473538 tcttaaaaaccaaaccaaacaccattgaaaactcaatttttcacttttgagggttgtagaatgacttcttaatactgaatagccaaaa 7473451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 17480934 - 17480748
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | ||||||||||||||||||| || |||||||||||||| ||||||||| ||||    
T  17480934 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagctaggatttgtagctttaaagataattgcttttgaaggatagaatcaat 17480835  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||||||||  |||||||||| |||||||| |||||||||||||||  ||||||||||||||||| ||| ||||||||||||    
T  17480834 tcttaaaagccaaactaaacaccattaaaaactcagtttttcacttttgaaggttgtagaatcacttcttggtgttgaaaagccaaa 17480748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 13892855 - 13892690
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  13892855 tttaatgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaatca 13892756  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||  |||||||||||||||||| ||| ||||||||    
T  13892755 aacaccattgaaaattcagcttttcacttttgaggattgtagaatcacttcttggtggtgaaaagc 13892690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 14032980 - 14032815
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  14032980 tttaatgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaatca 14032881  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||  |||||||||||||||||| ||| ||||||||    
T  14032880 aacaccattgaaaattcagcttttcacttttgaggattgtagaatcacttcttggtggtgaaaagc 14032815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 43342255 - 43342440
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  43342255 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagctagaatttgtagctttaaggataattgcttttggaggatagaatcaat 43342354  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||| ||||||||||||||| | |||||||| | |||||||||||||  |||||||||||||||||  || ||||||||||||    
T  43342355 tcttaaaaaccaaatcaaacacca-taaaaactcattgtttcacttttgaaggttgtagaatcacttcttgatgttgaaaagccaaa 43342440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 35458163 - 35458349
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | ||| |||||||||||| || ||||||||||||||||||| ||||||| ||||    
T  35458163 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagttaggatttgtagttttaaggataattgcttttggatgatagaatcaat 35458262  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||  ||| ||  ||||||||||||    
T  35458263 tcttaaaagtcaaaccaaacaccattaaaaactcaatttttcacttttgaaggttgtagaatcacaacttggtattgaaaagccaaa 35458349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 14033475 - 14033310
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||    
T  14033475 tttaatgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaacca 14033376  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||   |||||||||||| |||||||| ||||||||    
T  14033375 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcacgtcttagtggtgaaaagc 14033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 37996838 - 37996652
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||| ||||  |||| |||||||||||||||||||||    
T  37996838 ataatcaagatataaaatttaatgtagaattgattcaaggaaagccaaaagttaggaattgtagctttaaggtgaattacttttggaggatagaagcaat 37996739  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    | | |||||||||| ||||||  ||||||||||||| ||| |||||||||   |||||||||  ||||||  |||||||||| |||||    
T  37996738 tatgaaaagccaaaccaaacaatattgaaaactcaa-tttccacttttgaggtttgtagaattgcttcttgttgctgaaaagtcaaaa 37996652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 3739026 - 3739163
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||| |||||||||||||||||||||||  ||||| |||||  ||||| ||||||||| ||||| ||||||||||||| ||||||||||||    
T  3739026 ataatcaaaatattaaatttaatgtagaattgattctaagaaagtcaaaaattaggaattgtagctttaaggaaaattgcttttggatgatagaagcaat 3739125  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    | | |||||||||| | |||| |||||||||||||||||    
T  3739126 tatgaaaagccaaa-ccaacaacattgaaaactcaattt 3739163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 2443695 - 2443793
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| | |||| || ||||||||| ||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  2443695 tgtagaattgattctagaaaaggcataagctaggaattgtagctttatggagaattgtttttggaggatagaagcaattctgaaaagccaaaccaaaca 2443793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 14379836 - 14379738
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  14379836 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 14379738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 31686817 - 31686915
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  31686817 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31686915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 31786875 - 31786777
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  31786875 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31786777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 40254520 - 40254422
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  40254520 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 40254422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 44282670 - 44282572
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  44282670 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 44282572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 33598093 - 33598179
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttgga 90  Q
    |||| |||| ||||||||| |||||||||||||||||   |||  ||||||||||||||  ||||||||| || |||||||||||||    
T  33598093 ataaccaaagtataaaattaaatgtagaattgattctaccaaactcaaaagctaggattcctagcttcaaagaaaattgcttttgga 33598179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 43695084 - 43695016
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttca 72  Q
    |||||||||||||||||||||||| |||||||||||| |  ||  |||||| ||||| |||||||||||    
T  43695084 ataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttca 43695016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 44002767 - 44002699
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttca 72  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||||||||| |||||||||||    
T  44002767 ataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttca 44002699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 32497194 - 32497242
Alignment:
Q  11 aaatataaaatttaatgtagaattgattcttggaaagccaaaagctagg 59  Q
    |||||||||||||||||||||||||||||  |||||| |||||| ||||    
T  32497194 aaatataaaatttaatgtagaattgattcgaggaaagtcaaaagttagg 32497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 37551678 - 37551592
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttgga 90  Q
    |||||||||||| |||||||| || |||||||||||| |  ||  || || |||||| ||||||||||||  | |||||||||||||    
T  37551678 ataatcaaaatacaaaatttattggagaattgattctagttaactcagaaactaggaattgtagcttcaaccagaattgcttttgga 37551592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 41040114 - 41040301
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  41040114 ataatcaaaatttaaaatttaacgtagaattgattcttgaaaagccaaaagctaggatttgtagcttcaaggataattatttttggaggatagaagcaat 41040213  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  41040214 tcttaaaagccaaaccaaacaccattgaaaactcaatttttcacttttgagggttgtagaatcacttcttagtgctgaaaagccaaaa 41040301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 31905550 - 31905364
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| ||||||||||||| |||||||| | | ||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  31905550 ataatcaaaatagaaaatttaatgtaaaattgattgtagaaaagctataagttaggatttgtagctttaaggataattgcttttggaggatagaatcaat 31905451  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||||||||| | ||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||    
T  31905450 tcttaaaagtcaaaacaaacaccagtaaaaactcaatttttcacttttgaaggttctagaatcacttcttggtgctgaaaagccaaa 31905364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 41742202 - 41742386
Alignment:
Q  6 aatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattc 105  Q
    |||||||||| |||||||||||||||||||||||| | ||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||||| ||||||    
T  41742202 aatcaaaatagaaaatttaatgtagaattgattctagaaaagctaaaagttaggatttttagctttaaggacaattgcttttggaggatagaatcaattc 41742301  T
Q  106 ttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||  ||| ||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| |||||||||| ||| ||||    
T  41742302 ttaaaagttaaaccaaacaccattaaaaactcagtttttcacttttgaagattatagaatcacttgttagtgctgataagtcaaa 41742386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 21022627 - 21022792
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||    
T  21022627 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgctttaggaggatagaatcaattcttaaaagccaaacca 21022726  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||   ||||||||||||||||| ||| ||||||||    
T  21022727 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcacttcttggtggtgaaaagc 21022792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 27739346 - 27739511
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||    
T  27739346 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcacggataattgcttttggaggatagaagcaattcttaaaagtcaaacca 27739445  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  ||||||||||| |   ||||||||||||||||| ||| ||||||||    
T  27739446 aacaccattgaaaattcagcttttcacttttaagggttgtagaatcacttcttggtggtgaaaagc 27739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 33229307 - 33229142
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||    
T  33229307 tttaatgtagaattgattctacaaaagccaaaagttaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaacca 33229208  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||   |||||||||||| |||||||| ||||||||    
T  33229207 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcacgtcttagtggtgaaaagc 33229142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 7073270 - 7073439
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||| |||||||||||| ||    
T  7073270 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcaaggataattacttttgggaaatagaagcaatttttaaaagccaaacca 7073369  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||| ||||||||||||||   ||||||||||||||||| || |||||||| ||||    
T  7073370 aacaccattaaaaattcagtttttcacttttgagggttgtagaatcacttcttggtactgaaaagtcaaa 7073439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 37066550 - 37066723
Alignment:
Q  17 aaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaa 116  Q
    ||||||||| |||||||||||||| | ||||| | ||| ||||||||||||||| || ||||||||||||| ||||||| || |||||||||||||||||    
T  37066550 aaaatttaacgtagaattgattctagaaaagctagaagttaggatttgtagctttaatgataattgcttttagaggatataaccaattcttaaaagccaa 37066649  T
Q  117 atcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    | ||||||||||| |||||||| |||||||||||| ||  ||||||||||||||||| ||| ||||||||||||    
T  37066650 accaaacaccattaaaaactcagtttttcacttttaaaggttgtagaatcacttcttggtgttgaaaagccaaa 37066723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 39236891 - 39237056
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   |||| |||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||    
T  39236891 tttaatgtagaattgattctacaaaagtcaaaagttaggatttgtagcttcatggataattgtttttggaggatagaatcaattcttaaaagccaaacca 39236990  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||   ||||||||||||||||| ||| ||||||||    
T  39236991 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcacttcttggtggtgaaaagc 39237056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 21022185 - 21022036
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    |||||||||||||| |||||   ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||    
T  21022185 tttaatgtagaatttattctacaaaagccaaaagctaggatttgtaacttcatggataattgtttttggaggatagaatcaattcttaaaagccaaacca 21022086  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcactt 170  Q
    |||||||||||||| |||  |||||||||||||   ||||||||||||||    
T  21022085 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcactt 21022036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 19356621 - 19356434
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| |||||| |||||||||||||||||||||||| | |||   | |||| ||||||||||| || |||||||||||||||| |||||||||| |||     
T  19356621 ataataaaaatagaaaatttaatgtagaattgattctagaaaaattagaagcaaggatttgtagttttaaggataattgcttttagaggatagaatcaac 19356522  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactca-atttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||||||||| ||||||||||| | ||||||  ||||||| |||||||  ||||||||||||||||| ||| ||||||||||||    
T  19356521 tcttaaaagccaaaccaaacaccattaagaactcagttttttcatttttgaaggttgtagaatcacttcttggtgttgaaaagccaaa 19356434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 8958481 - 8958640
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||| | ||||||| ||||||||||||||| ||||||||||||  ||||| ||||||||| ||||| ||||| |||| |||||||||| ||||    
T  8958481 ataatcaaaattttaaatttagtgtagaattgattctaggaaagccaaaaattaggaattgtagctttaaggagaattgtttttagaggatagaaacaat 8958580  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaa 164  Q
    ||| ||||| |||| |||| | |||||||||||||| ||||||||||||||  ||||||||    
T  8958581 tctgaaaagtcaaaccaaataacattgaaaactcaa-ttttcacttttgaagtttgtagaa 8958640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 53645 - 53831
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||||||||||| || | |||||||| | |  || ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  53645 ataattaaaatataaaatttattggataattgattatagttaacccaaaagctaggaattgtagcttcaaccataattgcttttggaggatagaagcaat 53744  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    | | ||||| |||| |||||| | || ||| ||||| ||||||||||| ||  ||||| ||| |||||||  ||||||||||||||||    
T  53745 tatgaaaaggcaaaccaaacaactttaaaagctcaa-ttttcacttttcaagtttgtaaaatgacttcttgatgctgaaaagccaaaa 53831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 11018407 - 11018593
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| |||||||||||||||||||| ||||||||||  |||||||| ||||||  | ||||||||| ||||||||||| |||| |||||||||| ||||    
T  11018407 ataattaaaatataaaatttaatgtataattgattctatgaaagccataagctataaattgtagctttaaggataattgttttttgaggatagaaacaat 11018506  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| |||| ||||| |||||| ||||||||| |||| ||| |||||||||   ||||||||   ||||||  ||||||||| ||||||    
T  11018507 tctgaaaaaccaaaccaaacaacattgaaaattcaa-tttccacttttgaggcttgtagaagtgcttcttgttgctgaaaaaccaaaa 11018593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 2526403 - 2526256
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||| |||| |||||||||||| |  ||  |||||||||||| |||||||||||   | |||||||||||| || ||||||||||    
T  2526403 ataatcaaaatataaaatt-aatggagaattgattctagttaactcaaaagctaggaattgtagcttcatccagaattgcttttggggggtagaagcaat 2526305  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    ||| |||||||||| ||||||  || |||||||||| |||||||||||||    
T  2526304 tctgaaaagccaaaccaaacatgatagaaaactcaa-ttttcacttttga 2526256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 29542471 - 29542569
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  29542471 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 29542569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 32872636 - 32872698
Alignment:
Q  80 ttgcttttggaggatagaagcaattcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||    
T  32872636 ttgcttttggaggatagaagcaattttaaaaagtcaaatcaaacaacattgaaaactcaattt 32872698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 3260868 - 3260966
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||| ||||||    
T  3260868 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagtcaaaccaaaca 3260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 14082989 - 14082891
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||| ||||||    
T  14082989 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttaaaaagtcaaaccaaaca 14082891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 33115132 - 33115034
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| || | ||| | |||||||||| ||||||    
T  33115132 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaaactattttaaaaagccaaaccaaaca 33115034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 42663532 - 42663434
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||| ||||||    
T  42663532 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagtcaaaccaaaca 42663434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 29367436 - 29367522
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttgga 90  Q
    |||| |||| ||||||||| |||||||||||||||||   |||  |||||| |||||||| ||||||||| || |||||||||||||    
T  29367436 ataaccaaagtataaaattaaatgtagaattgattctaccaaactcaaaagttaggatttctagcttcaaagaaaattgcttttgga 29367522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 10900252 - 10900165
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||| ||||| |||||||||||   | ||||||||||||||    
T  10900252 ataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgcttttggag 10900165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 40979539 - 40979452
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| || |||||||||| | |  ||  |||||||||||| |||||||||||   | ||||||||||||||    
T  40979539 ataatcaaaatataaaatttattggagaattgattatagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggag 40979452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19375384 - 19375471
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| |  |||||||||||| |  ||  |||||| ||||| |||||||||||   | ||||||||||||||    
T  19375384 ataatcaaaatataaaatttattagagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgcttttggag 19375471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 33387674 - 33387761
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||| |||||||||||||||||| |||||||||| | |  ||  |||||| ||||| ||||||||||||  | ||||| ||||||||    
T  33387674 ataattaaaatataaaatttaatggagaattgattatggtcaactcaaaagttaggaattgtagcttcaaccagaattgtttttggag 33387761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 35802322 - 35802508
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35802322 ataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaggatatgtagcttcaaggataattgcttttggaggatagaagcaat 35802421  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    | ||||||| |||| |||||||||||||||||||||||||||||||||||   || |||||||||||||| || |||||||||||||    
T  35802422 ttttaaaagtcaaaccaaacaccattgaaaactcaatttttcacttttgagggttctagaatcacttcttggtactgaaaagccaaa 35802508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 8416782 - 8416596
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  8416782 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagttaggatttgtagctttaaggataattgcttttggaggatagaatcaat 8416683  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||||||||||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  8416682 tcttaaaagccaaatcaaacacgattaaaaattcaatttttcacttttgaaagttgtagaatcacttcttggtgttgaaaagccaaa 8416596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 45276381 - 45276567
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | ||||||||||||||||||| |||||||||||||||||||||||| || ||||    
T  45276381 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagctaggatttgtagctttaaggataattgcttttggaggatataatcaat 45276480  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    | ||||||| ||||  |||||||||| |||| ||| |||||||||||||||  |||| ||||||||||||  |||||||||||||||    
T  45276481 ttttaaaagtcaaacaaaacaccattaaaaattcagtttttcacttttgaaggttgttgaatcacttcttgctgctgaaaagccaaa 45276567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 36821605 - 36821791
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  36821605 ataatcaaaatataaaatttaatgtaaaattgattcttgaaaagcctaaagcttggaattgtaactttaaggataattgcttttggaggatagaagcaat 36821704  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| |||||||||| |||||| |||||||||||||| |||||||||||||   ||||||||    |||||  ||||||||||||||||    
T  36821705 tctgaaaagccaaaccaaacaacattgaaaactcaa-ttttcacttttgaggtttgtagaagtgtttcttgttgctgaaaagccaaaa 36821791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 22936548 - 22936734
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||| ||||| |||||||||||||||||||||||| | ||||| | ||||||||||||||||||| ||| ||||||  ||||||||||||||| ||||    
T  22936548 ataatcgaaatagaaaatttaatgtagaattgattctagaaaagctataagctaggatttgtagctttaagaataatttattttggaggatagaatcaat 22936647  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||||  |||  |||||||||| |||||||| |||||||||||||||  ||||||||||||||||| ||| ||||||| ||||    
T  22936648 tcttaaaagtgaaactaaacaccattaaaaactcagtttttcacttttgaaggttgtagaatcacttcttggtgttgaaaagtcaaa 22936734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 33165905 - 33165762
Alignment:
Q  10 aaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaa 109  Q
    |||||||||||||||||| |||||||||||| | ||| ||||||  ||||| || |||||| ||||| |||| ||||| |||||||||| ||||||||||    
T  33165905 aaaatataaaatttaatggagaattgattctagaaaaaccaaaaattaggaattatagctttaaggagaattacttttagaggatagaaacaattcttaa 33165806  T
Q  110 aagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    |||||||| |||||||  || |||||||||||||||||||||||    
T  33165805 aagccaaaccaaacactgttaaaaactcaatttttcacttttga 33165762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 35164359 - 35164540
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||| ||||||||||||||||||||||  |||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||        
T  35164359 ataattaaaatattaaatttaatgtagaattgattcgaggaaagtcaaaaactaggaattgtagcttcaaggagaattgcttttggaggatagaag---- 35164454  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
     || |||||||||| |||||| ||||||||| |||| ||| |||||||||   ||||||||   ||||||  ||||||||||||||||    
T  35164455 -ctgaaaagccaaaccaaacaacattgaaaattcaa-tttccacttttgaggtttgtagaagtgcttcttgctgctgaaaagccaaaa 35164540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 44238941 - 44238789
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||| |||||||||||||||||             |||||||||| || |||||||||||||| |||  |    
T  44238941 tttaatgtagaattgattctacaaaagccaaaagttaggatttgtagcttca-------------ttggaggatataatcaattcttaaaagctaaacta 44238855  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||   ||||||||||||||||| ||| ||||||||    
T  44238854 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcacttcttggtggtgaaaagc 44238789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 924221 - 924073
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||| || ||  ||||||||||| |  || ||||||| ||||| ||||||||| ||  | |||| ||||||||| |||||||||||    
T  924221 ataatcaaaatataaaatatattgacgaattgattctagttaaaccaaaagttaggaattgtagctttaactagaattacttttggagtatagaagcaat 924122  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    | | ||||| |||| ||||||  |||||||||||||  ||||||||||||    
T  924121 tttgaaaagtcaaaccaaacatgattgaaaactcaa-atttcacttttga 924073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 30210570 - 30210472
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  30210570 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 30210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 30984331 - 30984429
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  30984331 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 30984429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 34774377 - 34774475
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| || | ||| | |||||||||| ||||||    
T  34774377 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaaactattttaaaaagccaaaccaaaca 34774475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 13015799 - 13015733
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagctt 70  Q
    ||||||||||||||||||||||||||||||||||||| |  ||  |||||| ||||| |||||||||    
T  13015799 ataatcaaaatataaaatttaatgtagaattgattctcgttaactcaaaagttaggaattgtagctt 13015733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 629480 - 629552
Alignment:
Q  52 aagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  629480 aagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 629552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 3590194 - 3590107
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||| |||||||||||||||||| |||||||||||| |  ||  |||||| ||||| ||||||||||||  | ||||| ||||||||    
T  3590194 ataattaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttcaaccagaattgtttttggag 3590107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 2025633 - 2025546
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    |||||||||||||||||| || || |||||||||||| |  ||  ||||| |||||| |||||||||||   | ||||||||||||||    
T  2025633 ataatcaaaatataaaatatattggagaattgattctagctaactcaaaaactaggaattgtagcttcatccaaaattgcttttggag 2025546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 45150716 - 45150531
Alignment:
Q  6 aatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattc 105  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  45150716 aatcaaaatataaaatttaatgtagaattgattctaggaaaaccaaaagctaggatttgtagcttcaaggataattgtttttggaggatagaaacaattc 45150617  T
Q  106 ttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||   || |||||||||||||| |||||||||||||||||    
T  45150616 ttaaaagccaaaccaaacaccattgaaaactcaatttttcatttttgagggttatagaatcacttcttggtgctgaaaagccaaaa 45150531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 48254482 - 48254668
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||| ||||||||||||| | ||||| | ||||||||||||||||||| |||||||||||||||||||||||| || ||||    
T  48254482 ataatcaaaatagaaaatttaatatagaattgattctagaaaagctagaagctaggatttgtagctttaaggataattgcttttggaggatataatcaat 48254581  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||||||||||| ||| |||| |||||||||||||||  |||||||||||||| || ||| ||||||| ||||    
T  48254582 tcttaaaagtcaaaccaaacaccattaaaagctcagtttttcacttttgaaggttgtagaatcacttattggtgttgaaaagtcaaa 48254668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 31813504 - 31813341
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  |    
T  31813504 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaacta 31813405  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaa 184  Q
    |||||||||||||| |||  |||||||||||||   || |||||||||||||| ||| ||||||    
T  31813404 aacaccattgaaaattcagcttttcacttttgagggttatagaatcacttcttggtggtgaaaa 31813341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 28182490 - 28182352
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||    
T  28182490 ataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaattttagctttaaggataattgctgttggaggatagaagcaat 28182391  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    ||| |||||||||| |||||| |||||||||||||||||    
T  28182390 tctaaaaagccaaaccaaacaacattgaaaactcaattt 28182352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 48181189 - 48181003
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||    
T  48181189 ataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaggaattgtagttttaaggagaattgcttttggaggatagaagcaat 48181090  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| ||| | |||| |||| | |||||||||||||| ||| ||||| |||   ||||||||   ||||||  ||||||||||||||||    
T  48181089 tctaaaatgtcaaaccaaaaaacattgaaaactcaa-tttccacttctgaggtttgtagaagtgcttcttgttgctgaaaagccaaaa 48181003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 39251596 - 39251410
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| ||||||||||||||||||||||||   ||||  | ||| ||||||||||||||| | ||||||||| |||||||||||| || ||||    
T  39251596 ataatcaaaatagaaaatttaatgtagaattgattctaaaaaagttagaagttaggatttgtagctttagggataattgtttttggaggatataatcaat 39251497  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||||||||||||||| |||| ||| |||||||||||| ||  ||||||||||||||||| ||| ||||||| ||||    
T  39251496 tcttaaaagtcaaatcaaacaccattaaaaattcagtttttcacttttaaaggttgtagaatcacttcttggtgttgaaaagtcaaa 39251410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 11263811 - 11263711
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11263811 ataatcaaaatataaaatttaatctagaattgattctaggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 11263712  T
Q  104 t 104  Q
    |    
T  11263711 t 11263711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 42074512 - 42074326
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||| ||||||||||||||||||||||  | |||| |||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||    
T  42074512 ataatcaaaatattaaatttaatgtagaattgattcgagcaaagtcaaaagctaggaattgtagctttaaggagaattgtttttggaggatagaagcaat 42074413  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| |||||||||| |||||| |||||||||||||| ||| |||||||||   ||||||||   ||||||  |||| |||||||||||    
T  42074412 tctgaaaagccaaaccaaacagcattgaaaactcaa-tttccacttttgaggtttgtagaagtgcttcttgttgctcaaaagccaaaa 42074326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 51229847 - 51229709
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||||| ||||  ||||||||||||||||||||    
T  51229847 ataatcaaaatattaaatttaatgtagaattgattctaggaaagccaaaagttaggaattgtagctttaaggagaattatttttggaggatagaagcaat 51229748  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    | | |||||| ||| |||||| |||||||||||||||||    
T  51229747 tttgaaaagctaaaccaaacaacattgaaaactcaattt 51229709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 42274625 - 42274500
Alignment:
Q  17 aaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaa 116  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||| ||||||| |||||||||    
T  42274625 aaaatttaatgtagaattgattctatgaaagccaaaagctaggaattgtaactttaaggagaattgcttttggaggatagaatcaattctaaaaagccaa 42274526  T
Q  117 atcaaacaccattgaaaactcaattt 142  Q
    |||||||| |||| ||||||||||||    
T  42274525 atcaaacaacattcaaaactcaattt 42274500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 33025776 - 33025914
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||| |||||| |||||||||||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  33025776 ataattaaaatattaaattttatgtagaattgattataggaaagccaaaagctaggaattgtagctttaaggagaattgcttttggaggatagaagcaat 33025875  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    | | ||||| |||| |||||| |||||| ||||||||||    
T  33025876 tttgaaaagtcaaaccaaacaacattgataactcaattt 33025914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 53687355 - 53687540
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||| ||||||| ||||||||||||| | | |||||||||| |||||| ||||||||| ||  | ||||||||||||||||||||||||||    
T  53687355 ataatcaaaatattaaatttagtgtagaattgattttagaaaagccaaaacctaggaattgtagctttaacaagaattgcttttggaggatagaagcaat 53687454  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    | | ||||| |||| ||||||  ||||||||||||| ||| |||||||||   ||||||||   ||| ||| |||||||||||||||    
T  53687455 tatgaaaagtcaaaccaaacaatattgaaaactcaa-tttccacttttgaggtttgtagaagtgctttttattgctgaaaagccaaa 53687540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 11257847 - 11257758
Alignment:
Q  102 attcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  11257847 attcttaaaagccaaaccaaacaccattgaaaactcaatttttcacttttgataattgtagaatcacttcttgatgctgaaaagccaaaa 11257758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 51407584 - 51407398
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||||| ||||| || |||||||||| | |  || | |||| |||| | ||||||||||||  | ||||||||||||||||||||||||||    
T  51407584 ataattaaaatataatatttattggagaattgattttagttaaccaaaaaactagaaattgtagcttcaaccaaaattgcttttggaggatagaagcaat 51407485  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| |||||||||| |||||| | || ||||||||| ||||||||||| | |  ||||||||  ||||||  ||||||||||||||||    
T  51407484 tctgaaaagccaaaccaaacaactttaaaaactcaa-ttttcacttttcagatatgtagaatggcttcttgatgctgaaaagccaaaa 51407398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 51129044 - 51129142
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  51129044 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 51129142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 47141431 - 47141529
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    |||||||||||||||  |||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  47141431 tgtagaattgattctaagaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 47141529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 47697175 - 47697077
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||| ||||||    
T  47697175 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaaggcaaaccaaaca 47697077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 44610802 - 44610889
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||| |||||||||||||||||| ||||||||||||   |||  |||||||||| | ||||||||||||  | ||||||||||||||    
T  44610802 ataattaaaatataaaatttaatggagaattgattctaataaactcaaaagctagaaattgtagcttcaaccagaattgcttttggag 44610889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 21985486 - 21985400
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttgga 90  Q
    |||| |||| ||||||||| |||||||||||||||||   |||  |||||| |||||||| ||||||||| || |||||||||||||    
T  21985486 ataaccaaagtataaaattaaatgtagaattgattctaccaaactcaaaagttaggatttctagcttcaaagaaaattgcttttgga 21985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 52692103 - 52692005
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||| ||||| ||||||||||||  | |||||||||||||||||| || | ||| ||||||| |||| ||||||    
T  52692103 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaatctatttttaaaagtcaaaccaaaca 52692005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 40237419 - 40237312
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||   ||||| ||||| ||||| |||||   | ||||||||||||| | ||||||||||    
T  40237419 ataatcaaaatataaaatttgatggagaattgattctagttaatttaaaagttaggaattgtaacttcatccaaaattgcttttggaaggtagaagcaat 40237320  T
Q  104 tcttaaaa 111  Q
    ||| ||||    
T  40237319 tctgaaaa 40237312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 1527707 - 1527633
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagc 100  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | ||||||||| |||||||| ||||    
T  1527707 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgctttcggaggataaaagc 1527633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 28883810 - 28883774
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattct 40  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28883810 ataatcaaaatataaaatttaatggagaattgattct 28883774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 41535934 - 41535847
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    |||| |||| |||| |||| |||||||||||||||||   |||  ||||| ||||||||  ||||||||| || ||||||||||||||    
T  41535934 ataaccaaagtatacaattaaatgtagaattgattctaccaaattcaaaaactaggattcctagcttcaaagagaattgcttttggag 41535847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 38469244 - 38469175
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggata 95  Q
    ||||||||||||| | ||||||  | |||||| || ||||||||||||  | ||||||||||||||||||    
T  38469244 tgtagaattgattataggaaagtaagaagctaagaattgtagcttcaactagaattgcttttggaggata 38469175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 39267534 - 39267618
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttg 88  Q
    |||| |||| ||||||||| | |||||||||||||||   |||  |||||| |||||||  ||||||||| || |||||||||||    
T  39267534 ataaccaaagtataaaattaattgtagaattgattctaccaaactcaaaagttaggattcctagcttcaaagaaaattgcttttg 39267618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 38767911 - 38767720
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38767911 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaaactaggctttgtagcttcaaggataattgcttttggaggatagaagcaat 38767812  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaaacaaa 196  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||||||   || || ||||||||||| ||||||||||| ||||||||||    
T  38767811 tcttaaaagtcaaaccaaacaccattgaaaacttaatttttcacttttgagggttctaaaatcacttcttggtgctgaaaag-caaaaacaaa 38767720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 22606338 - 22606525
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  22606338 ataatcaaaatataaaatttaatatagaattgattcttggaaagtcaaaagctaggatttgtagcttcacgaataattgcttttggaggatagaagcaat 22606437  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    |||||||||  ||| |||||||||||||||| |||||||||| |||||||   ||||||||||||||||| |||||||||||||||||    
T  22606438 tcttaaaagttaaaccaaacaccattgaaaattcaatttttctcttttgagggttgtagaatcacttcttggtgctgaaaagccaaaa 22606525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 52058247 - 52058417
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  52058247 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaacca 52058346  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    |||||||||||||| ||| ||||| |||||||| ||||||||||||| || || ||||||||||| |||||    
T  52058347 aacaccattgaaaattcagttttttacttttgagaattgtagaatcattttttggtgctgaaaagtcaaaa 52058417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 30418375 - 30418545
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  30418375 ataatcaaaatagaaaatttaatgtagaattgattctaggaaagctaaaagttaggatttgtagcttgaaggataattgcttttggaggatagaatcaat 30418474  T
Q  104 tcttaaaagccaaa-tcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttctt 173  Q
    | ||||||||||||  ||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||    
T  30418475 ttttaaaagccaaacccaaacaccattaaaaactcaattttttacttttgaagattatagaatcacttctt 30418545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 53404089 - 53404249
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||    
T  53404089 ataatcaaaatataaaatttaatgtaaaattgattctaggaaaaccaaaagctaggaattgtagctttaaggagaattgcttttggaggatagaagctat 53404188  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaa 164  Q
     ||||||||||||| |||||| ||||||||||||||||||| |||||| | | ||||||||    
T  53404189 gcttaaaagccaaaccaaacaacattgaaaactcaattttttacttttaagatttgtagaa 53404249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 28963846 - 28964032
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||| ||||||||||||| | ||||| | ||| ||||||||||||||| ||| |||||||||||||||||||| || ||||    
T  28963846 ataatcaaaatagaaaatttaatatagaattgattctagaaaagctagaagttaggatttgtagctttaagaataattgcttttggaggatataatcaat 28963945  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||||||||||| |||||||| |||||||||||||||  |||||||||||||| || ||| ||||||| ||||    
T  28963946 tcttaaaagtcaaaccaaacaccattaaaaactcagtttttcacttttgaatgttgtagaatcacttattggtgttgaaaagtcaaa 28964032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 53663613 - 53663799
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  53663613 ataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaattgtagctttaaggataattgcttttggaggatagaatcaat 53663712  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| ||||||||||||||||  | || ||||||||| ||| ||||||||||  ||||||||   ||||||  |||| |||||||||||    
T  53663713 tctaaaaagccaaatcaaacggcgttaaaaactcaa-tttccacttttgaagtttgtagaagtgcttcttgttgctcaaaagccaaaa 53663799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 49723903 - 49723755
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||| ||||||||||||| | ||  |||||||||| || ||||||||| || || |||| |||||||||||||||| ||||    
T  49723903 ataatcaaaatataaaatttaatatagaattgattctagaaataccaaaagctaagaattgtagctttaacgagaatt-cttttggaggatagaaacaat 49723805  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  49723804 tcttaaaagccaaaccaaacaccattggaaactcaatttttcacttttga 49723755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 48407041 - 48406927
Alignment:
Q  59 gatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaatt 158  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||   ||    
T  48407041 gattggtagcttcaaggataattgcatttggaggatagaagcaattcttaaaagtcaaatcaaacaccattgaaaactcaatttttcatttttgagggtt 48406942  T
Q  159 gtagaatcacttctt 173  Q
    ||||||||| |||||    
T  48406941 gtagaatcatttctt 48406927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 45105926 - 45105789
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||| |||||||| || || |||||| ||| | |||||||| ||||||||| |||||||    
T  45105926 ataatcaaaatattaaattgaatgtagaattgattctagaaaagc-aaaagctatgaattttagctttaagaagaattgcttctggaggatataagcaat 45105828  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    ||| |||||||||| |||||| |||||||||||||||||    
T  45105827 tctgaaaagccaaaccaaacaacattgaaaactcaattt 45105789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 29386014 - 29386195
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||| ||||||||||||||| | ||||  | ||||||| ||||||    | || |||||||| |||| || |||| || ||||    
T  29386014 ataatcaaaataaaaaatttattgtagaattgattctagaaaagttagaagctagaatttgt----ttaaagataattgattttcgaagataaaatcaat 29386109  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    | ||||||||||||  |||||||||  |||||||| |||| ||||||||||  ||||||||||||||||| ||| ||||||||||||    
T  29386110 tgttaaaagccaaactaaacaccataaaaaactcagtttt-cacttttgaaggttgtagaatcacttctttgtgttgaaaagccaaa 29386195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 26457231 - 26457046
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||||||||||| || |||||||||||| |  || ||||||||||| | ||||||||||||    ||||| |||||||||||| |||||||    
T  26457231 ataattaaaatataaaatttattggagaattgattctagttaacccaaaagctagaaattgtagcttcaatcgaaattgtttttggaggataaaagcaat 26457132  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| ||||| |||||| |||| | || |||||||||||||   ||||| |||  |||| ||| |||||||| || |||||||||||||    
T  26457131 tctgaaaagtcaaatctaacaactttaaaaactcaatttt--ccttttcaaatctgtaaaatgacttcttaatgttgaaaagccaaaa 26457046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 28911701 - 28911562
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||| |||||||||| | |  ||  |||||| ||||| |||||||||||   | ||||||||||||||| ||||||||||    
T  28911701 ataatcaaaatataaaatttaatggagaattgattttagttaactcaaaagttaggaattgtagcttcatccacaattgcttttggagggtagaagcaat 28911602  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttt 143  Q
    ||| | |||||||| ||||||  ||| ||||||| |||||    
T  28911601 tctgataagccaaaccaaacatgattcaaaactcgatttt 28911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 51834248 - 51834346
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    |||| |||||||||| | ||||||| ||| ||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  51834248 tgtataattgattctagaaaagccagaagttaggaattgtagctttatggagaattgcttttggaggatagaagcaattctgaaaagtcaaaccaaaca 51834346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 18140550 - 18140452
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  18140550 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactaaaattgcttttggaggataaaagctattttaaaaagccaaaccaaaca 18140452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 24038091 - 24038189
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  24038091 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 24038189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 24246716 - 24246618
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  24246716 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 24246618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 31431065 - 31431163
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  31431065 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31431163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 49127763 - 49127665
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  49127763 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactaaaattgcttttggaggataaaagctattttaaaaagccaaaccaaaca 49127665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 5937821 - 5937908
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||||||||| |||||||||||   ||||||||||||||||    
T  5937821 ataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccataattgcttttggag 5937908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 16203072 - 16203159
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||| |||||||||||||||||| |||||||||||| |  ||  |||||||||||| ||||||||||||  | ||||||||||||||    
T  16203072 ataattaaaatataaaatttaatggagaattgattctagtcaactcaaaagctaggaattgtagcttcaaccaaaattgcttttggag 16203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 39382987 - 39383085
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||| ||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  39382987 tgtagaattgattctaggaaagtaagaagttaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 39383085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 39732930 - 39732843
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||||||||| |||||||||||   | ||||||||||||||    
T  39732930 ataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggag 39732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 50523849 - 50523936
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||| ||||||| || |||||||||||| |  ||  |||||||||||| |||||||||||   | ||||||||||||||    
T  50523849 ataatcaaaatattaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggag 50523936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 48407072 - 48407038
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgatt 38  Q
    |||||||||||||||||||||||||||||||||||    
T  48407072 ataatcaaaatataaaatttaatgtagaattgatt 48407038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 51677222 - 51677153
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaa 73  Q
    ||||| |||||||||||||||||| | |||||||||| | |||  |||||| ||||| ||||||||||||    
T  51677222 ataattaaaatataaaatttaatggaaaattgattctagtaaactcaaaagttaggaattgtagcttcaa 51677153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 8503888 - 8503819
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaa 73  Q
    ||||||||||||||||||||| || | |||||||||| |  ||  |||||| ||||| ||||||||||||    
T  8503888 ataatcaaaatataaaatttattggaaaattgattctagttaacacaaaagttaggaattgtagcttcaa 8503819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 37815 - 37631
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||| ||||||||||||| | ||||| | ||||||  ||||||||||| ||||||||||| ||||||||||||||| ||||    
T  37815 ataatcaaaatagaaaatttaatttagaattgattctagaaaagctagaagcta--atttgtagcttaaaggataattgtttttggaggatagaatcaat 37718  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||    
T  37717 tcttaaaagccaaaccaaacaccattaaaaactcaatttttcacttttgaaggttgtagaatcacttcttggtgttgaaaagccaaa 37631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 25472743 - 25472929
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | |||   | |||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  25472743 ataatcaaaatagaaaatttaatgtagaattgattctagaaaatgtagaagctatgatttgtagcttcaaggataattgcttttggaggatagaatcaat 25472842  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||||||||||| |||||||||||| ||| |||||||  ||||||||||||||||| ||| ||||||||||||    
T  25472843 tcttaaaagtcaaaccaaacaccattaaaaactcaatttgtcatttttgaaggttgtagaatcacttcttggtgttgaaaagccaaa 25472929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 25970553 - 25970404
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| || || |||| |||||||||||||||||||||    
T  25970553 ataatcaaaatataaaatttaatgtagaattgattctaagaaagccaaaagctaggaattgtagctttaaagagaattacttttggaggatagaagcaat 25970454  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  25970453 tcttaaaagccaaaccaaacaccattgaatattcaatttttcacttttga 25970404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 12909332 - 12909167
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||    
T  12909332 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagtcaaacca 12909233  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||  |||||||||||||   ||||||||||||||||| ||| ||||||||    
T  12909232 aacaccattgaaaattcagcttttcacttttgagggttgtagaatcacttcttggtggtgaaaagc 12909167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 37371199 - 37371038
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||||| | ||| ||||||||||||||| || |||||||||||||||||||||||| ||||    
T  37371199 ataatcaaaatagaaaatttaatgtagaattgattctagaaaagctagaagttaggatttgtagctttaaagataattgcttttggaggatagaaccaat 37371100  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaat 165  Q
    |||||||||||||| |||||| |||| |||||| |||||||||||||||||| |||||||||    
T  37371099 tcttaaaagccaaaccaaacatcattaaaaacttaatttttcacttttgaaagttgtagaat 37371038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 14999988 - 14999850
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||| ||||||||| ||||| |||| |||||||||||||||| ||||    
T  14999988 ataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaaattaggaattgtagctttaaggagaattacttttggaggatagaatcaat 14999889  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    ||| |||||||||| |||||| |||||||||||||||||    
T  14999888 tctaaaaagccaaaccaaacaacattgaaaactcaattt 14999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 30825310 - 30825172
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||||||||||    
T  30825310 ataattaaaatattaaatttaatgtagaattgattcttggaaagccaaaagctaggaattgtaactttaaggagaattgtttttggaggatagaagcaat 30825211  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaattt 142  Q
    ||| ||||| |||| |||||| |||||||||||||||||    
T  30825210 tctaaaaaggcaaaccaaacaacattgaaaactcaattt 30825172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 30139807 - 30139987
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| ||||||||| ||||||||||||||   ||||| | |||||| ||||  |||||| ||||||||||| |||||||| |||||| ||||    
T  30139807 ataatcaaaatagaaaatttaacgtagaattgattctaaaaaagctagaagctaagattcatagctttaaggataattgtttttggagaatagaatcaat 30139906  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaa 184  Q
    ||||||||| |||| ||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| ||| ||||||    
T  30139907 tcttaaaagtcaaaccaaacaccattaaaaactcaaattttcacttttaaagattgtagaatcacttcttggtgttgaaaa 30139987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 26826502 - 26826353
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||| ||||||||||| |||||||||||||||||| | ||||||  ||||| ||||| ||||| ||| ||||| |||| ||||||||||||||||| |||    
T  26826502 ataagcaaaatataaattttaatgtagaattgattataggaaaggaaaaagttaggaattgtacctttaaggagaattacttttggaggatagaagtaat 26826403  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  26826402 tcttaaaagccaaaccaaataccattgaaaactcaattttccacttttga 26826353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 43664792 - 43664940
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| | ||| | ||||||||| ||| | |||||||||||||||||||||  |||    
T  43664792 ataatcaaaatataaaatttaatgtagaattgattctaggaaagtcaaaggttagaaattgtagctttaagaaaaattgcttttggaggatagaatgaat 43664891  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    ||| |||||| ||| |||||| ||||||||| |||| |||||||||||||    
T  43664892 tctgaaaagctaaaacaaacaacattgaaaattcaa-ttttcacttttga 43664940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 39857197 - 39857058
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||||||||||||||| |||||||||||| |  ||  ||||||||| || |||||||||||   | |||| |||||||||||||||||||||    
T  39857197 ataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctatgaattgtagcttcatccagaattacttttggaggatagaagcaat 39857098  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttt 143  Q
    ||| ||||| |||| ||||||  |||||||||||||||||    
T  39857097 tctgaaaagtcaaaccaaacatgattgaaaactcaatttt 39857058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 25341474 - 25341572
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  25341474 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 25341572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 31012432 - 31012530
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  31012432 tgtagaattgattctaggaaagtaagaagctaggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31012530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 41064707 - 41064609
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| | |||| || ||||||||| ||||||||| | ||| ||||| ||||||||||||||||||||| | ||||| |||| ||||||    
T  41064707 tgtagaattgattctagaaaagtcagaagctaggaattgtagctttatggagaattgtttttggaggatagaagcaattatgaaaaggcaaaccaaaca 41064609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 26827741 - 26827790
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaa 53  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26827741 ataatcaaaatataaaatttaatgtagaattgattctaggaaaggcaaaa 26827790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 298638 - 298721
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgctttt 87  Q
    ||||| |||||||||||||||||| |||||||||||| | |||   |||||||| || ||||||||||||  | ||||||||||    
T  298638 ataattaaaatataaaatttaatggagaattgattctagtaaacttaaaagctaagaattgtagcttcaatcaaaattgctttt 298721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 32450871 - 32450784
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||| ||| | ||||||||||||  | ||||||||||||||    
T  32450871 ataatcaaaatataaaatttattggagaattgattctagttaactcaaaagttagaaattgtagcttcaaccaaaattgcttttggag 32450784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 19544645 - 19544572
Alignment:
Q  18 aaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    |||||||||| |||||||||||| | |||  ||||||||| || ||||||||||||  |||||| |||||||||    
T  19544645 aaatttaatggagaattgattctagtaaactcaaaagctatgaattgtagcttcaaccataattacttttggag 19544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 45202591 - 45202454
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| ||||||||||||||| || |||||||||||| |  || | ||||||||  | |||| | |||||  | ||||| |||||||| | |||||||||    
T  45202591 ataattaaaatataaaatttattggagaattgattctagttaacctaaaagctaaaaattgtggtttcaaccaaaattgtttttggagaaaagaagcaat 45202492  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatt 141  Q
    ||| ||| |||||| |||||| | || |||||| ||||    
T  45202491 tctgaaatgccaaaccaaacaactttaaaaacttaatt 45202454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 4035578 - 4035492
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttgga 90  Q
    |||| |||| ||||||||| | |||||||||||||||   |||  |||||| |||||||  ||||||||| || |||||||||||||    
T  4035578 ataaccaaagtataaaattaattgtagaattgattctaccaaactcaaaagttaggattcctagcttcaaagaaaattgcttttgga 4035492  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 39958411 - 39958485
Alignment:
Q  14 tataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttg 88  Q
    ||||||||| |||||| ||||||||||   |||  ||||||||||||||  ||||||||| || |||||||||||    
T  39958411 tataaaattaaatgtataattgattctaccaaactcaaaagctaggattcctagcttcaaagaaaattgcttttg 39958485  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 2000147 - 2000215
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaa 73  Q
    |||||||||||||||| ||||||| |||||||||||| |  ||  |||||| ||||| ||||||||||||    
T  2000147 ataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattgtagcttcaa 2000215  T

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Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 365711 - 365525
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| ||||||||||||| |||||| ||| | ||||  | ||| ||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  365711 ataatcaaaatagaaaatttaatgtaaaattgagtctagaaaagttagaagttaggatttgtagctttaaggataattgcttttggatgatagaatcaat 365612  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  365611 tcttaaaagtcaaaccaaacaccattaaaaactcaatttttcacttttgaagattgtagaatcatttcttagtgctaaaaagccaaa 365525  T

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Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 21517352 - 21517517
Alignment:
Q  21 tttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatca 120  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||    
T  21517352 tttaatgtagaattgattctacaaaagccaaaagctaggatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagtcaaacca 21517451  T
Q  121 aacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagc 186  Q
    |||||||||||||| |||| |||||||||||||   ||||||||||||||||| ||| ||||||||    
T  21517452 aacaccattgaaaattcaacttttcacttttgagggttgtagaatcacttcttggtggtgaaaagc 21517517  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 10683287 - 10683125
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    |||||||||||| |||||||||||||||||||||||| | ||| | | ||| ||||||||||||||| ||||||||||  |||| |||||||||| ||||    
T  10683287 ataatcaaaatagaaaatttaatgtagaattgattctagaaaaactagaagttaggatttgtagctttaaggataattaattttagaggatagaatcaat 10683188  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcac 168  Q
    |||||||||||||| ||||||||||| |||| |||   |||||||||||||  ||||||||||||    
T  10683187 tcttaaaagccaaaccaaacaccattaaaaattca--gtttcacttttgaaggttgtagaatcac 10683125  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 4146931 - 4146784
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||||| |||| |||||||||||| |  ||  |||||||||||| |||||||||||   | |||||||||||| || ||||||||||    
T  4146931 ataatcaaaatataaaatt-aatggagaattgattctagttaactcaaaagctaggaattgtagcttcatccagaattgcttttggggggtagaagcaat 4146833  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttga 153  Q
    ||| |||||||||| ||||||  || |||||||||| |||||||||||||    
T  4146832 tctgaaaagccaaaccaaacatgatagaaaactcaa-ttttcacttttga 4146784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 31746188 - 31746287
Alignment:
Q  25 atgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    |||||||||||||||| | ||||||| ||| ||||| ||||||||  | ||| ||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  31746188 atgtagaattgattctagaaaagccataagttaggaattgtagctatatggagaattgcttttggaggatagaagcaattttgaaaagtcaaaccaaaca 31746287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 30018949 - 30018851
Alignment:
Q  26 tgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagccaaatcaaaca 124  Q
    ||||||||||||||| ||||||  | ||| ||||| ||||||||||||  | |||||||||||||||||| |||| ||| | |||||||||| ||||||    
T  30018949 tgtagaattgattctaggaaagtaagaagataggaattgtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 30018851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 20838473 - 20838560
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||||||||||||| ||||| || |||||||||| | | |||  |||||| ||||||||||||||||||  | ||||||||||||||    
T  20838473 ataatcaaaatataagatttattggagaattgattatagtaaactcaaaagttaggatttgtagcttcaaccagaattgcttttggag 20838560  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 30134267 - 30134180
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggag 91  Q
    ||||| |||||||||||||||||| |||||||||||| |  ||  |||||||||| | ||||||||||||  | ||||||||||||||    
T  30134267 ataattaaaatataaaatttaatggagaattgattctggttaactcaaaagctagaaattgtagcttcaaccagaattgcttttggag 30134180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 4210 - 4025
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||| |||||| |||||||||||||||||||||| | | ||||| | |||||||||||| |||||| || ||||||||||||| |||||||||| ||||    
T  4210 ataataaaaatagaaaatttaatgtagaattgattttagaaaagctagaagctaggatttttagctttaatgataattgcttttcgaggatagaatcaat 4111  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaa 190  Q
    ||||||||||||||  |||||||||| |||| ||| |||||||||||||||  ||||||||||| ||||| ||||||||||||||||    
T  4110 tcttaaaagccaaactaaacaccattaaaaattcagtttttcacttttgaaggttgtagaatca-ttcttggtgctgaaaagccaaa 4025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 33040 - 33202
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgc-ttttggaggatagaagcaa 102  Q
    ||||||||||||||||||||||| ||||||||||||| | ||| ||||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||    
T  33040 ataatcaaaatataaaatttaatttagaattgattctagaaaaaccaaaagttagaatttgtagctt-aaggataattgctttttggagaatagaagcaa 33138  T
Q  103 ttcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatc 166  Q
    || ||||||| ||||  ||| | ||||||||||||||||||||| ||||||  |||||||||||    
T  33139 tttttaaaagtcaaactaaatatcattgaaaactcaatttttcatttttgaggattgtagaatc 33202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 91656 - 91468
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataat--tgcttttggaggatagaagca 101  Q
    ||||||||||||||||| |||||||||||||  ||||  |||||||||||| ||||| ||||||||| ||| | |||  |||||||||||||||||| ||    
T  91656 ataatcaaaatataaaagttaatgtagaatttgttctatgaaagccaaaagttaggaattgtagctttaagtagaatattgcttttggaggatagaatca 91557  T
Q  102 attcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||||| |||||||||| |||||  |||||||||||||| ||| |||||||||   ||||||||  |||||||| |||||||||| |||||    
T  91556 attctaaaaagccaaaccaaactacattgaaaactcaa-tttccacttttgaggtttgtagaagtacttcttattgctgaaaagtcaaaa 91468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 16935 - 16749
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttcaaggataattgcttttggaggatagaagcaat 103  Q
    ||||||||||||||||| |||||||||||||  ||||  |||| ||||||  ||||| ||||||||| ||  | ||||||||||||||||||||| ||||    
T  16935 ataatcaaaatataaaagttaatgtagaatttgttctatgaaaaccaaaaattaggaattgtagctttaattagaattgcttttggaggatagaatcaat 16836  T
Q  104 tcttaaaagccaaatcaaacaccattgaaaactcaatttttcacttttgaaaattgtagaatcacttcttagtgctgaaaagccaaaa 191  Q
    ||| |||||||||| |||||| |||||||||||||| ||| |||||| || | ||||||||  |||||||  || |||||||||||||    
T  16835 tctaaaaagccaaaccaaacaacattgaaaactcaa-tttccactttcgagatttgtagaagtacttcttgttgttgaaaagccaaaa 16749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 9672 - 9740
Alignment:
Q  4 ataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagctaggatttgtagcttca 72  Q
    ||||||||||||||||||||| || |||||||||||| |  ||  |||||| ||||| |||||||||||    
T  9672 ataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaattgtagcttca 9740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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