View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17060_low_21 (Length: 237)
Name: NF17060_low_21
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 10470300 - 10470514
Alignment:
| Q |
10 |
gtagattatactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttctttt--agtatgttaaaaaatagcac |
107 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
10470300 |
gtagatcatactttctctttaaagtgaaagccagcgccacaagtgtaccctgttaaaatagccaaataatattcttttttagcatgttaaaaaatagcac |
10470399 |
T |
|
| Q |
108 |
aacaacaccatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatt--agagtgaattagtttgagtgtagaattgtg |
205 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
10470400 |
aacaccaccatgtttatcaagatttgttggaacagtgtggtctttgctattatgtggtgcctaggattagagagtgaattagctt--atgtagaattgtg |
10470497 |
T |
|
| Q |
206 |
cagtcttttttactaag |
222 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10470498 |
cagtcttttttactaag |
10470514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 10486412 - 10486618
Alignment:
| Q |
17 |
atactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttctttt--agtatgttaaaaaatagcacaacaaca |
114 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
10486412 |
atactttctccttagtgtgaaagccaatgccacaagtgtatcctgttaaaatagccagataatattcttttttagtatgttaaaaaatagcacaa---ca |
10486508 |
T |
|
| Q |
115 |
ccatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatt--agagtgaattagtttgagtgtagaattgtgcagtctt |
212 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
10486509 |
ccatgtttatcaagagttagttgaacagtgtggtctttgctattatgaggtgcctaggattagagagtgaattagtttgattgtagaattgtgcagttgt |
10486608 |
T |
|
| Q |
213 |
ttttactaag |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
10486609 |
ttttactaag |
10486618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 10515287 - 10515495
Alignment:
| Q |
18 |
tactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttctttt--agta-tgttaaaaaatagcacaacaaca |
114 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||| || | | | |||||||| || ||||||| |
|
|
| T |
10515287 |
tacttcctcttcaatgtgaaagccaatgccacaagtgtatcctgttaaaatagccaa-taatattcttttttagcagtataaaaaaataacataacaaca |
10515385 |
T |
|
| Q |
115 |
ccatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatt--agagtgaattagtttgagtgtagaattgtgcagtctt |
212 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||| ||| | | || |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10515386 |
ccatgtttatcaagttttggtggaacagtgtggtctttgctattatgtgatgcatatgattagagagtgaattagtttgagtgtagaattgtgcagtctt |
10515485 |
T |
|
| Q |
213 |
ttttactaag |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
10515486 |
ttttactaag |
10515495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 10460547 - 10460698
Alignment:
| Q |
17 |
atactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaa-tagccaaataattttcttt--tagtatgttaaaaaatagcacaacaac |
113 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||| |||||| | ||||||||| |||||||||||| || ||| ||||| ||||||||||||||||| ||| |
|
|
| T |
10460547 |
atacttcctcttcaatgtgaaagccaatgccagaagtgtttgctgttaaaaatagccaaataatattttttattagtaggttaaaaaatagcacaaaaac |
10460646 |
T |
|
| Q |
114 |
accatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggt |
165 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10460647 |
accatgtttatcaagatttggtggaacagtgtggtctttgctattatgtggt |
10460698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 10542418 - 10542612
Alignment:
| Q |
17 |
atactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttc--ttttagtatgttaaaaaatagcacaacaaca |
114 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||| |||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||| || | | |
|
|
| T |
10542418 |
atactttctcttcaatgtaaaagccaataccacaagtgtatgctgttaaaatagccaaataatgttcttttttagtagattaaaaaatagcataata--a |
10542515 |
T |
|
| Q |
115 |
ccatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatt--agagtgaattagtttgagtgtagaattgtgcagtc |
210 |
Q |
| |
|
||||||||||||||| || |||||||||| |||||||| |||| ||||| | ||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10542516 |
ccatgtttatcaagactttgtggaacagt-aggtctttggtattctgtggtgcgtaggattagagagtgaattagtttgagtgtagaactgtgcagtc |
10542612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 7483759 - 7483561
Alignment:
| Q |
17 |
atactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttcttttagtatgttaaaaaatagcacaacaacacc |
116 |
Q |
| |
|
|||||||||| ||| |||||||| || ||| |||||||||||||||||||||| ||||||| || |||| | |||||| |||||||||||| |
|
|
| T |
7483759 |
atactttctccttagtgtgaaagtcaatgccacaagtgtatcctgttaaaatagcaaaataatattgtttttg---gttaaagaatagcacaaca----- |
7483668 |
T |
|
| Q |
117 |
atgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggattagag--tgaattagtttgagtgtagaattgtgcagtctttt |
214 |
Q |
| |
|
||| |||||||| || |||||| ||||||||||||||||||| ||| | ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
7483667 |
-tgtctatcaagagttggtggaatagtgtggtctttgctattatgtgctgcctaggattagagaatgaattagtctgagtgtagaattgtgcagtcgttt |
7483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 10504920 - 10505130
Alignment:
| Q |
17 |
atactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttctttt-----agtatgttaaaaaatagcacaaca |
111 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||| || ||| |||| |||| || ||||||| ||| |
|
|
| T |
10504920 |
atactttctcttcaatgtgaaagccaatgccacaagtgtatcctgttaaaatcgccaaataacattagtttttaccagtaggttagaatatagcaccaca |
10505019 |
T |
|
| Q |
112 |
acaccatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatt--agagtgaattagtttgagtgtagaattgtgcagt |
209 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| ||| ||||||| | || | ||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
10505020 |
acatcatgtttatcaagatttggtggaacagtgtgaccttagctattatgatgtgcataggattagagagtgaattagtttgagtgtagagttgtgcagt |
10505119 |
T |
|
| Q |
210 |
cttttttacta |
220 |
Q |
| |
|
||||| |||| |
|
|
| T |
10505120 |
ttttttaacta |
10505130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10858092 - 10858280
Alignment:
| Q |
30 |
aatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttcttttagtatgttaaaaaatagcacaacaacaccatgtttatcaaga |
129 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||||||||||| |||||| ||||| |||| |||||| | |||| |||||| |||||||||||||| |
|
|
| T |
10858092 |
aatgtgaaagccaatgccacaagtatatcctgttaaaatagcccaataatattctt--agtagattaaaagacagcataacaac--catgtttatcaaga |
10858187 |
T |
|
| Q |
130 |
tttagtggaacagtgtggtctttgctattaagtggtacctaggattagagtgaattagtttgagtgtagaattgtgcagtcttttttactaag |
222 |
Q |
| |
|
||| ||||||||||| || ||||| ||| ||||| | | ||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
10858188 |
ttttgtggaacagtgcggcctttgttatgttgtggtgcattggattagagtgaagaagtttaagtgtagaactgtgcagtcttttttactaag |
10858280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 10490904 - 10491097
Alignment:
| Q |
17 |
atactttctctttaatgtgaaagccagcaccaaaagtgtatcctgttaaaatagccaaataattttctttt--agtatgttaaaaaatagcacaacaaca |
114 |
Q |
| |
|
|||||||||| ||| |||||||| || ||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||| |
|
|
| T |
10490904 |
atactttctccttagtgtgaaagtcaatgccacaagtgtatcctgttaaaatagccaaataatattcttttacagtagattaaaaaatagc---acaaca |
10491000 |
T |
|
| Q |
115 |
ccatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatt--agagtgaattagtttgagtgtagaattgtgcagtctt |
212 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||| | | |
|
|
| T |
10491001 |
ccatgtttatcaagagttggtggaacagtgtagtccttg-------------cctaggattagagagtgaattagtttgagtgtagaattgtgcaattgt |
10491087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 27965203 - 27965279
Alignment:
| Q |
54 |
gtatcctgttaaaatagccaaataattttc-ttttagtatgttaaaaaatagcacaacaacaccatgtttatcaagatt |
131 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| |||||||| |||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
27965203 |
gtatgctgttaaaatagcccaataatattctttttagtagattaaaagatagcataaca--accatgtttatcaagatt |
27965279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 9077851 - 9077747
Alignment:
| Q |
114 |
accatgtttatcaagatttagtggaacagtgtggtctttgctattaagtggtacctaggatta--gagtgaattagtttgagtgtagaattgtgcagtct |
211 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||||||||| | ||| | |||||||| ||||||| ||||||| ||||||| || ||||||| |
|
|
| T |
9077851 |
accatatttatcaagattctatggaacagtgcagtctttgctattctgaggtgcataggattaaagagtgaagaagtttgaatgtagaactgagcagtct |
9077752 |
T |
|
| Q |
212 |
ttttt |
216 |
Q |
| |
|
||||| |
|
|
| T |
9077751 |
ttttt |
9077747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University