View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_23 (Length: 234)
Name: NF17060_low_23
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46036242 - 46036465
Alignment:
| Q |
1 |
ttgcgactgctttgtcctatgtcagtccttgtatctgttgcttgtctttttgaagcatcttgtaggtgcagaaactgtctgtaaaataatacacataata |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46036242 |
ttgcgactgctttgtcctatgtcagtccttatatctgttgcttgtctttttgaagcatcttgtaggtgcagaaactgtctgtaaaataatacacataata |
46036341 |
T |
|
| Q |
101 |
gaattacaccgatatataa--taagaacttattgtattgtcgcataagtctatattatatctgtattttaaaataactcgattcttattgtatgttgata |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46036342 |
caattacaccgatatataatgtaagaacttattgtattgtcgcataagtctatattatatctgtattttaaaataactcgattcttattgtatgttgata |
46036441 |
T |
|
| Q |
199 |
taaaattaatttacattgataatg |
222 |
Q |
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| |||||||||||||||||||||| |
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| T |
46036442 |
tgaaattaatttacattgataatg |
46036465 |
T |
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