View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_3 (Length: 475)
Name: NF17060_low_3
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 283 - 464
Target Start/End: Original strand, 40879689 - 40879865
Alignment:
| Q |
283 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
382 |
Q |
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| T |
40879689 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
40879788 |
T |
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| Q |
383 |
ttgttccaacatagaagatttattgaaattaaagcaacaacttctgcttcacctatctcttcatgcatcacaactccttcat |
464 |
Q |
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| T |
40879789 |
ttgttccaacatagaagatttattgaaa-----gcgacaacttttgcttcacctatctcttcatgcatcacaactccttcat |
40879865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 40879288 - 40879447
Alignment:
| Q |
17 |
agatgtaagggaaggttgaattgtttatacgtctacttttaattgatcatctcttctatgatagtattttcattatgaaagtggttgtgtacaa----at |
112 |
Q |
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| T |
40879288 |
agatgtaagggaaggttgaattgtttat-cgcctacttttaattgatcatcttttctatgatagtatttttattatgaaagtggttgtgtacaaacaaat |
40879386 |
T |
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| Q |
113 |
atatgtatgtgtgtatgaaatatagattggtataaaattctagtttgggatatatgtaggg |
173 |
Q |
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| T |
40879387 |
atatgtatgtgtgtatgaaatatagattggtataaaattctagtttgggatatatgtaggg |
40879447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 40879521 - 40879635
Alignment:
| Q |
173 |
ggccacggttgtgtacaaatatattattgtttttgtttggatctccattgattatatatgtttcacctctttcacaatttggtggcctcttggagtaatt |
272 |
Q |
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| T |
40879521 |
ggccacggttgtgtacaaatatattattgtttttgtttggatctccattgattatatatgtttcacctctttcacaatttggtggcctcttggagtaatt |
40879620 |
T |
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| Q |
273 |
ttatcacacttctca |
287 |
Q |
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| T |
40879621 |
ttatcacacttctca |
40879635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 7857734 - 7857785
Alignment:
| Q |
124 |
tgtatgaaatatagattggtataaaattctagtttgg--gatatatgtaggg |
173 |
Q |
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| T |
7857734 |
tgtatgaaatttggattggtatgaaattctagtttgggagatatatgtaggg |
7857785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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