View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_4 (Length: 469)
Name: NF17060_low_4
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 35 - 448
Target Start/End: Complemental strand, 25838779 - 25838353
Alignment:
| Q |
35 |
tatagctttgaaggagtcttgtttaatttgtgtatttgaaagggttgattataccaacgaggcttgagtctagcataaggagctagacacccacaa---- |
130 |
Q |
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| T |
25838779 |
tatagctttgaaggagtcttgtttaatttgtgtattagaaagggttgattataccaatgaggcttgagtctagcataaggagctagacacccacaacatg |
25838680 |
T |
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| Q |
131 |
--------atgtttgattctcggctgggagagacacgcatgtttagtgtccgacgcgtctcgaatggggttaccttaggttaagggaattcttatgagaa |
222 |
Q |
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| T |
25838679 |
gcgaacctatgtttgattcttgggtgggagagacacgcacgtttagtgtccgacacgtctcgaatggggttaccttaggttaagggaattcttatgagaa |
25838580 |
T |
|
| Q |
223 |
aaaacaattaagagaaagggtagatgataacttttccttagcattaattttattgatgcaataggtctaaaaccctagccattatgctgacttgttctgg |
322 |
Q |
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| T |
25838579 |
aaaacaattaagagaaagggtagatgataacttttccttagcattaattttattgatgtaataggtcttaaaccctagccattatgctgacttgttctgg |
25838480 |
T |
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| Q |
323 |
tttttt-cggttaacacaaacctacgactcttaatttcgtctgaattcagccactaactgcataaaaattatgattttttcagtatatttgactgcaaag |
421 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25838479 |
ttttttccggttaacacaaacctacgactcttaatttcatctgaattcagccactaactgcataaaaattatgattttttcagtatatttgactgcaaag |
25838380 |
T |
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| Q |
422 |
tagcaaatcataaactatttttaccct |
448 |
Q |
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| T |
25838379 |
tagcaaatcataaactatttttaccct |
25838353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 25838795 - 25838765
Alignment:
| Q |
1 |
ttagagtatcagattttatagctttgaagga |
31 |
Q |
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| T |
25838795 |
ttagagtatcagattttatagctttgaagga |
25838765 |
T |
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