View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_6 (Length: 396)
Name: NF17060_low_6
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 33616640 - 33616919
Alignment:
| Q |
48 |
ttagttaatagtaaattataacactctcccatcattcttatgcattctgtcatataagttttaagcttagttacaattttgatcctcatatttttccctc |
147 |
Q |
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| T |
33616640 |
ttagttaatagtaaattataacagtctcccgtcattcttatgcattctctcatataagttttaggcttaattacaattttgatccccatatttttccctc |
33616739 |
T |
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| Q |
148 |
tttcgaattaaattcatccaattttagtttctctttaagatttttatactaaaataattgtgagatatcatatttcaattgaagtttttggagggatttt |
247 |
Q |
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| T |
33616740 |
tctgaaattaaattcatccaattttggtttctctttaagatttttatactaaaataattgtgagatatcatatttcaattgaagtttttggaggattttc |
33616839 |
T |
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| Q |
248 |
aggtaatttcgtgatagttaatcattcaacgtcatttaaaatatgtcacatcatcatttctgaatccaaatgaatgagaa |
327 |
Q |
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| T |
33616840 |
aggtaatttcatgatagttaatcattcaacgtcatttaaaaaatgtcacatcatcatttttgactccaaacgtatgagaa |
33616919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33616409 - 33616464
Alignment:
| Q |
1 |
ttgagaatataaaccattaaaatatgagtatgatatttttagaatatttagttaat |
56 |
Q |
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| T |
33616409 |
ttgagaatataaaccattaaaatatgagtatgatatttttagaatatttagttaat |
33616464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 26066828 - 26066856
Alignment:
| Q |
278 |
gtcatttaaaatatgtcacatcatcattt |
306 |
Q |
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| T |
26066828 |
gtcatttaaaatatgtcacatcatcattt |
26066856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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