View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_7 (Length: 376)
Name: NF17060_low_7
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 25793193 - 25792845
Alignment:
| Q |
18 |
ataatgactgtcttattgatataactagctcttatgaacttgtttagaacgttcgtggtggaagagttgtacttcaccctatcaagaatgtgccctcaga |
117 |
Q |
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| T |
25793193 |
ataataactgtcttgttaatttatctagctcttatgaacttgtttagaacgttcgtggtggaagagttgtacttcaccccatcaagaatgtgccctcaga |
25793094 |
T |
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| Q |
118 |
atttgagcatgtggaaaaaggggatgcattacatggtgagtttgtttgctgatttgatcactgtctcacacattatagttttggagcttttcattatggt |
217 |
Q |
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| T |
25793093 |
atttgagcatgtggaaaaaggggatgcattacatggtgagtttgtttactgatttgatcactgtctcacacattatagttttggagcttttcattatggt |
25792994 |
T |
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| Q |
218 |
ttacactaatctattattatgctgatttttgcttttcctctattccttttgtttaagcaatggaactagctctgtctttggagaagttaacaaatgaaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
25792993 |
ttacactaatctattattatgctgatttttgcttttcctctattccttttgtttaagcaatggaattagctttgtctttggagaagttaacaaatgaaaa |
25792894 |
T |
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| Q |
318 |
acttctgaatgtgcatagtgtaatgcctctttgtccctttagctctgtg |
366 |
Q |
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| T |
25792893 |
acttctgaatgtgcatagtgtaatgcctctttgtccctttagctctgtg |
25792845 |
T |
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Back To:
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 4112529 - 4112601
Alignment:
| Q |
277 |
atggaactagctctgtctttggagaagttaacaaatgaaaaacttctgaatgtgcatagtgtaatgcctcttt |
349 |
Q |
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| T |
4112529 |
atggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctcttt |
4112601 |
T |
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