View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17060_low_8 (Length: 357)
Name: NF17060_low_8
Description: NF17060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17060_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 20896738 - 20897078
Alignment:
| Q |
1 |
tgacaaaagataaatagttaaatttagtttttaannnnnnnnnnn---ggctggataagctttaagtattaatttttaagtttattgttgggtaaattaa |
97 |
Q |
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| T |
20896738 |
tgacaaaagataaatagttaaatttagtttttaatttttaatttttttggctggataagctttaagtattaatttttaagttttttgttgggtaaattaa |
20896837 |
T |
|
| Q |
98 |
gttaaattaaattaacaaatgttagtaaatttgtttcctatgtagtggaataagacatgctgctctaagtaaatttgtttggctttaattgaagttctaa |
197 |
Q |
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| T |
20896838 |
gttaaattaaattaacaaatgttagtaaatttgtttcctatgtagtggaataagacatgctgctctaagtaaatttgtttggctttaattgaagttctaa |
20896937 |
T |
|
| Q |
198 |
tattgaaacgaaaatttagattgagttgtatgtttggcttatggttgagaatttgcaactgtatgtgtgaattcaaagtatctacagatttcctttgagg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20896938 |
tattgaaacgaaaatttagattgagttgtatgtttggcttatgtttgagaatttgcaactgtatgtgtgaattcaaagtatctacagatttcctttgagg |
20897037 |
T |
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| Q |
298 |
caaactaatggaattccaaacatatccttagcatattgaga |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
20897038 |
caaactaatggaattccaaacatatccttagcatattgaga |
20897078 |
T |
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