View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17061_high_13 (Length: 459)
Name: NF17061_high_13
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 43 - 452
Target Start/End: Original strand, 414144 - 414546
Alignment:
| Q |
43 |
gcgcgtggttgtgaaagtaacgcgcgcattagtggtaagtgttttcttcttcaacacgcaaaatgtaactcattctatttctgtgactatgaacaaaaat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414144 |
gcgcgtggttgtgaaagtaacgcgcgcattggtggtaagtgttttcttcttcaacacgcaaaatgtaactcattctatttctgtgactatgaacaaaaat |
414243 |
T |
|
| Q |
143 |
tgaaaactagtttaacaaagtaattaattataattatcccataaataaatgctctcaattcgtttcattacatcattctctcatttcgatttcaaatctc |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
414244 |
tgaaaacta-------------attaattataattatcccataaataaatgctctcaattcgtttcattacatcattctctcatttcaatttcaaatctc |
414330 |
T |
|
| Q |
243 |
actttcttctcttttct------tccgccgcaaccatgtcatccaccaccgcaaccaacgccgtctccgccacagatgatgcgaaacacggtttctctcg |
336 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414331 |
actttcttctcttttcttcttcttccgccgcaaccatgtcatccaccaccgcaaccgacgccgtctccgccacagatgatgcgaaacacggtttctctcg |
414430 |
T |
|
| Q |
337 |
tcctgagatgtacaaagaaaacctcgctggaaccgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcctccgcgtctt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414431 |
tcctgagatgtacaaagaaaacctcgctggaaccgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcctccgcgtctt |
414530 |
T |
|
| Q |
437 |
gaagcttctgatgatg |
452 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
414531 |
gaagcttctgatgatg |
414546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 450
Target Start/End: Complemental strand, 401202 - 401079
Alignment:
| Q |
327 |
gtttctctcgtcctgagatgtacaaagaaaacctcgctggaaccgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcc |
426 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||| |||||||| || | || ||||||||||| || ||||| ||||||||||| | ||||||||||| |
|
|
| T |
401202 |
gtttctcccgttatgagatgtacaagcaaaaccttgctggaacagttgaatcctacgatcgtcatgtctttctatgttacaagaaccaccaaacttggcc |
401103 |
T |
|
| Q |
427 |
tccgcgtcttgaagcttctgatga |
450 |
Q |
| |
|
|||| || ||||||| || ||||| |
|
|
| T |
401102 |
tccgtgtgttgaagcctccgatga |
401079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University