View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_17 (Length: 427)
Name: NF17061_high_17
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 39652260 - 39651859
Alignment:
| Q |
10 |
aagaaaatcaggcctttcagcagattttagagaatgaactgtcctcactaaattctatagtaaataatcaggtctctaggtcaaccgaaacaaatccact |
109 |
Q |
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| T |
39652260 |
aagaaaatcaggcctttcagcagattttagagaatgaactgtcgtcactaaattctatagtaaataatcaggtctctaggtcaaccgaaacaaatccact |
39652161 |
T |
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| Q |
110 |
tgccggaaatcccttgcctcaatatcaggcctctcggccgattacaatggatgcaatgaatgcattgtcctcactgcgttctagaatacagaatcagata |
209 |
Q |
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| T |
39652160 |
tgccggaaatcccttgcctcaatatcaggcctctcagccgattacaatggatgcaatgaatgcattgtcctcactgcgttctagaatacagaatcagata |
39652061 |
T |
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| Q |
210 |
tccacgcaaaataatgtccctgcattcgccttgcaaaataatgcctctggattcaccacagcttccacaatactgaatggcataaacaatggtatatctc |
309 |
Q |
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| T |
39652060 |
tccacgcaaaataatgtccctgcattcgccttgcaaaataatgcctctggattcaccacagcttccacaatactgaatggcataaacaatggtatatctc |
39651961 |
T |
|
| Q |
310 |
aagaatcattatctacgttggcaacaaattatggatatccttttcacaccgttccaagtacgtctctaggtgtacaaaaccatgccatccaaaagaagcg |
409 |
Q |
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| T |
39651960 |
aagaatcaggatctacgttggcaacaaattatggatatccttttcacaccgttccaagtacgtctctaggtgtacaaaaccatgccatccaaaagaagcg |
39651861 |
T |
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| Q |
410 |
ag |
411 |
Q |
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|| |
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| T |
39651860 |
ag |
39651859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 39672174 - 39672136
Alignment:
| Q |
373 |
ctctaggtgtacaaaaccatgccatccaaaagaagcgag |
411 |
Q |
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| T |
39672174 |
ctctaggtgtacgaaaccatgccatccaaaagaagcgag |
39672136 |
T |
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