View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_19 (Length: 402)
Name: NF17061_high_19
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 56167544 - 56167924
Alignment:
| Q |
1 |
gaaatgaccgagagggattggcgtatatttagggaagattataacatttcttataagggttccaagattccaagacctatgaggagttgggttgagagta |
100 |
Q |
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| T |
56167544 |
gaaatgaccgagagggattggcgtatatttagggaagattataacatttcttataagggttccaagattccaagacctatgaggagttgggttgagagta |
56167643 |
T |
|
| Q |
101 |
agttgagtcaagagcttttgaaggctgtggagaaggctggttataaaaccccttctcccattcagatggctgctattccgcttggacttcagcagcgcga |
200 |
Q |
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| T |
56167644 |
agttgagtcaagagcttttgaaggctgtggagaaggctggttataaaaccccttctcccattcagatggctgctattccgcttggacttcagcagcgcga |
56167743 |
T |
|
| Q |
201 |
tgttatcggcgttgctgagacaggttctgggaagactgctgcgtttgttttgcctatgttgagttatatcactaggcttcctcctattagtgaggagaat |
300 |
Q |
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| T |
56167744 |
tgttatcggcgttgctgagacaggttctgggaagactgctgcgtttgttttgcctatgttgagttatatcactaggcttcctcctattagtgaggagaat |
56167843 |
T |
|
| Q |
301 |
gaagcggagggtccttatgctgttgttatggcgcccactcgcgagcttgctcagcagattgaggatgagacggttaaattt |
381 |
Q |
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| T |
56167844 |
gaagcggagggtccttatgctgttgttatggcgcccactcgcgagcttgctcagcagattgaggatgagacggttaaattt |
56167924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 708151 - 707780
Alignment:
| Q |
10 |
gagagggattggcgtatatttagggaagattataacatttcttataagggttccaagattccaagacctatgaggagttgggttgagagtaagttgagtc |
109 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
708151 |
gagagggattggcgtatttttagggaagattataatatttcgtataagggttcaaagattccgaggcctattaggagttgggttgagagtaagttgagtc |
708052 |
T |
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| Q |
110 |
aagagcttttgaaggctgtggagaaggctggttataaaaccccttctcccattcagatggctgctattccgcttggacttcagcagcgcgatgttatcgg |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
708051 |
aagagattttgaaggctgtggagaaggctggttataaaaccccttcaccgattcagatggcttctattccgcttggacttcagcaacgcgatgttatcgg |
707952 |
T |
|
| Q |
210 |
cgttgctgagacaggttctgggaagactgctgcgtttgttttgcctatgttgagttatatcactaggcttcctcctattagtgaggagaatgaagcggag |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |
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| T |
707951 |
tgttgctgagacgggttctgggaagactgctgcgtttgtgctgcctatgttgagttatatcactaggctgccgcctattagtgaggagaatgaagctgag |
707852 |
T |
|
| Q |
310 |
ggtccttatgctgttgttatggcgcccactcgcgagcttgctcagcagattgaggatgagacggttaaattt |
381 |
Q |
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||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
707851 |
ggtccttatgctgttgttatggctccgactcgtgagcttgctcagcagattgaggatgagaccgttaaattt |
707780 |
T |
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