View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_22 (Length: 383)
Name: NF17061_high_22
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 2098281 - 2097929
Alignment:
| Q |
13 |
aatatctaaccaattaggaagaatatgaaactaaatgaattcagagaagcctttcttttgtctaggaaggggatagttccatggttgttttaacaaagaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2098281 |
aatatctaaccaattaggaagaatatgaaactaaatgaattcagagaagcctttcttttttctaggaaggggatagttccatggttgttttaacaaagaa |
2098182 |
T |
|
| Q |
113 |
atcgtgtcattgctcagaattatcgaatcaccatgtatcttttttatgaacaattggattatgttttccatatatcaacattcaaatgtactgtaatttt |
212 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2098181 |
atcgtgtcatcgctcagaattatcgaatcaccatgtatcttttttatgaacaattggattatgttttccatat--caacattcaaatgtactgtaatttt |
2098084 |
T |
|
| Q |
213 |
aagttaaagataataatgcatactctatgaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2098083 |
aagttaaagataataatgcatactctatgaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagct |
2097984 |
T |
|
| Q |
313 |
tgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataac |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097983 |
tgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttgataac |
2097929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 241 - 367
Target Start/End: Complemental strand, 2106544 - 2106418
Alignment:
| Q |
241 |
gaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcgat |
340 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
2106544 |
gaacagacctgattgataacaagttcggagtctccgtagacagtgatgttcctatatcctttccttagagcttgtttcagtcctaaaatcagtgcacgat |
2106445 |
T |
|
| Q |
341 |
actcagcaacattatttgtttgataac |
367 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2106444 |
actcagcaacattatttgtttgataac |
2106418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 2106741 - 2106582
Alignment:
| Q |
13 |
aatatctaaccaattaggaa-gaatatgaaactaaatgaattcagagaagcctttcttttgtct----aggaaggggatagttccatggttgtttt-aac |
106 |
Q |
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|||||||||||||||||||| | |||| |||||||||||||||| || ||||||| |||| | | | ||| ||||||||||||| |||||||| ||| |
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| T |
2106741 |
aatatctaaccaattaggaaaggatataaaactaaatgaattcaaaggagccttttttttttttttttaagaaagggatagttccatagttgtttttaac |
2106642 |
T |
|
| Q |
107 |
aaagaaatcgtgtcattgctcagaattatcgaatcaccatgtatcttttttatgaacaat |
166 |
Q |
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||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
2106641 |
aaagaaatcatgtcatcgcttagaattatcaaatcaccatgtatcttttttatgaacaat |
2106582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 2042091 - 2041967
Alignment:
| Q |
241 |
gaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcgat |
340 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| | ||| ||||||| ||||||||| || | |||| |||| |||||| ||||| ||||||| |
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| T |
2042091 |
gaacaaacctgattgataacaagttctgagtctccttgcacattgatgtttctatatcctctctggattgcttaattcaatcctaagatcaaagcgcgat |
2041992 |
T |
|
| Q |
341 |
actcagcaacattatttgtttgata |
365 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
2041991 |
actcagcaacattatttgtttgata |
2041967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 2054163 - 2054045
Alignment:
| Q |
247 |
acctgattgataacaagttcggaatctccgtagacagtgatgttcctatatcctttccttacagcttgtttcagtcctaaaatcaatgcgcgatactcag |
346 |
Q |
| |
|
||||||||||||||||| | ||| ||||| | ||| |||||||| || ||||||| | | ||||||||||||||| || ||||| ||||| ||||||| |
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|
| T |
2054163 |
acctgattgataacaaggttggagtctccttgcacactgatgttcttaaatcctttattgatagcttgtttcagtcccaatatcaaagcgcggtactcag |
2054064 |
T |
|
| Q |
347 |
caacattatttgtttgata |
365 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
2054063 |
caacgttatttgtttgata |
2054045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 2088432 - 2088380
Alignment:
| Q |
310 |
gcttgtttcagtcctaaaatcaatgcgcgatactcagcaacattatttgtttg |
362 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2088432 |
gcttgtttcattcctaaaatcaaagcgcgatactcagcaacattatttgtttg |
2088380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 2082911 - 2082854
Alignment:
| Q |
13 |
aatatctaaccaattaggaagaatatgaaactaaatgaattcagagaagcctttctttt |
71 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| || |||| |||||||||| |
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|
| T |
2082911 |
aatatctaaccaattaggatgaatatg-aactaaatgaatccaaagaaacctttctttt |
2082854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 2136276 - 2136313
Alignment:
| Q |
310 |
gcttgtttcagtcctaaaatcaatgcgcgatactcagc |
347 |
Q |
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||||||||||| |||||||||||||| ||||||||||| |
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| T |
2136276 |
gcttgtttcagacctaaaatcaatgctcgatactcagc |
2136313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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