View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_26 (Length: 366)
Name: NF17061_high_26
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 55245251 - 55245594
Alignment:
| Q |
19 |
acttatatcatataccatcttcacctcccatttctcattcaattcaattcaaaggaatcttcagataagctaaggttcacaggtgcaataaagtgctcaa |
118 |
Q |
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| T |
55245251 |
acttatatcatataccatcttcacctcccatttctcattcaattcaattcaaaggaatcttcagacaagctaaggttcacaggtgcaatgaagtgctcaa |
55245350 |
T |
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| Q |
119 |
cttggtcattcaatacgaaggaactgcatgcgctttgcccttaagcaaaattggccaaaccacgttaacaaattttgtgtattcatatgttgttttttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245351 |
cttggtcattcaatacgaaggaactgcatgcgctttgcccttaagcaaaattggccaaaccacgttaacaaattttgtgtattcatatgttgttttttct |
55245450 |
T |
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| Q |
219 |
aacaaatatctactatataacacaacaccaataccacaattatatagt----agtcactaaaataataaaaactagctactagaattaatgttaccttaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
55245451 |
aacaaatatctactatataacacaacaccaataccacaattatatagtagtcagtcactaaaacaataaaaactagctactagaattaatgttacctt-a |
55245549 |
T |
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| Q |
315 |
aaaataatagtggggtttgtgtagtaaatgaattaatattcttcg |
359 |
Q |
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|||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
55245550 |
aaaataatagtgtggattgtgtagtaaatgaattaatattgttcg |
55245594 |
T |
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