View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_28 (Length: 358)
Name: NF17061_high_28
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 13028588 - 13028917
Alignment:
| Q |
18 |
aaatgaataaaatatgaaaatgttatttattattggtattcgcactcccactgttactaaattccaagatccacaacacccatccatttcattcattcac |
117 |
Q |
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| T |
13028588 |
aaatgaataaaatatgaaaatggttattattattggtattcgcactcccactgttactaaattccaagatccacaacacccatccatttcattcattcac |
13028687 |
T |
|
| Q |
118 |
ctattcaattttgggttaggcttgcctacagtaggacatcacaaagtcacgacatctatgacatctactaccgttagatcgagatcgaacagtctaaatt |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13028688 |
ctattcaattttgtgttaggcttgcctacagtaggacatcacaaagtcacgaaatctatgacatctactaccgttagatcgagatcgaacagtctaaatt |
13028787 |
T |
|
| Q |
218 |
ttataagtatacatcttattgtttttctaaaatactaaatttaaagtatttgatctcgatccagcgatcacgtgtgacgtgaccatgtgagtgtacaaac |
317 |
Q |
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|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
13028788 |
ttatgagtatacatcttattgtttttctaaaacattaaatttaaagtatttgatctcgatccagcgatcacgtgtgtcgtgaccatgtgaatgtacaaac |
13028887 |
T |
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| Q |
318 |
tagtcatcgcgtgtaatacaatttcttcat |
347 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
13028888 |
tagtcattgcgtgtaatacaatttcttcat |
13028917 |
T |
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