View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_high_42 (Length: 256)

Name: NF17061_high_42
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_high_42
NF17061_high_42
[»] chr6 (5 HSPs)
chr6 (32-245)||(30833556-30833768)
chr6 (1-34)||(6389909-6389942)
chr6 (1-34)||(33706184-33706217)
chr6 (1-33)||(3199305-3199337)
chr6 (1-33)||(21003155-21003187)
[»] scaffold0047 (1 HSPs)
scaffold0047 (121-190)||(61896-61965)
[»] chr8 (5 HSPs)
chr8 (1-40)||(4528999-4529038)
chr8 (1-34)||(32923721-32923754)
chr8 (1-34)||(42216639-42216672)
chr8 (1-33)||(17696608-17696640)
chr8 (1-33)||(34181515-34181547)
[»] chr7 (4 HSPs)
chr7 (1-37)||(31657771-31657807)
chr7 (1-40)||(6626550-6626589)
chr7 (1-34)||(1795437-1795470)
chr7 (1-33)||(6607634-6607666)
[»] chr4 (7 HSPs)
chr4 (1-39)||(1614292-1614330)
chr4 (1-34)||(322029-322062)
chr4 (1-34)||(11021630-11021663)
chr4 (1-34)||(47690289-47690322)
chr4 (1-33)||(8445040-8445072)
chr4 (1-33)||(15168911-15168943)
chr4 (1-33)||(51892661-51892693)
[»] chr3 (3 HSPs)
chr3 (5-43)||(3017559-3017597)
chr3 (1-33)||(34682277-34682309)
chr3 (1-33)||(51436996-51437028)
[»] chr5 (7 HSPs)
chr5 (1-34)||(5907257-5907290)
chr5 (1-34)||(32792360-32792393)
chr5 (1-34)||(39412502-39412535)
chr5 (1-37)||(18673904-18673940)
chr5 (1-33)||(23910293-23910325)
chr5 (1-33)||(27858386-27858418)
chr5 (1-33)||(38790272-38790304)
[»] chr1 (5 HSPs)
chr1 (1-34)||(5904810-5904843)
chr1 (1-34)||(38717713-38717746)
chr1 (1-33)||(36465934-36465966)
chr1 (1-33)||(39759303-39759335)
chr1 (1-33)||(47671998-47672030)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-33)||(5838-5870)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-33)||(35722-35754)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-33)||(49715-49747)
[»] chr2 (5 HSPs)
chr2 (1-33)||(2098648-2098680)
chr2 (1-33)||(4902621-4902653)
chr2 (1-33)||(4902981-4903013)
chr2 (1-33)||(4950019-4950051)
chr2 (1-33)||(16265583-16265615)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 32 - 245
Target Start/End: Complemental strand, 30833768 - 30833556
Alignment:
32 ttattttttcatgatgttgtgtttttcatccttttcaccgaaaaaagtctttaacttaataaccnnnnnnnnn-ctcctctgcaagattgttgtctttct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||    
30833768 ttattttttcatgatgttgtgtttttcatccttttcaccgaaaaaagtctttaacttaataaccctttttttttctcctatgcaagattgttgtctttct 30833669  T
131 tggttgccatttgattagttactaagattatgtatattaattgtgggtttattatgcttccaaagcacatgtttctatcaattaaatattgaattcctct 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||    
30833668 tggttgccatttgattagttactaggattatgtatattaattgtgggtttattatgcttctaaagcaca--tttctatcaattaaatattgaattcctct 30833571  T
231 tctgttatgaaacaa 245  Q
    |||||||||||||||    
30833570 tctgttatgaaacaa 30833556  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6389942 - 6389909
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
6389942 aaagtgcagggaccaatgacacatttaaacctta 6389909  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33706184 - 33706217
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
33706184 aaagtgcagggaccaatgacacatttaaacctta 33706217  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3199337 - 3199305
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
3199337 aaagtgcagggaccaatgacacatttaaacctt 3199305  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21003155 - 21003187
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
21003155 aaagtgcagggaccaatgacacatttaaacctt 21003187  T

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Target: scaffold0047 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 61965 - 61896
Alignment:
121 ttgtctttcttggttgccatttgattagttactaagattatgtatattaattgtgggtttattatgcttc 190  Q
    |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||    
61965 ttgtctttcttggttgccatttgattagttactaggaatatgcatattaattgtgggtttattatgcttc 61896  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4528999 - 4529038
Alignment:
1 aaagtgcagggaccaatgacacatctaaaccttatttttt 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
4528999 aaagtgcagggaccaatgacacatttaaaccttatttttt 4529038  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32923754 - 32923721
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
32923754 aaagtgcagggaccaatgacacatttaaacctta 32923721  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42216639 - 42216672
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
42216639 aaagtgcagggaccaatgacacatttaaacctta 42216672  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17696640 - 17696608
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
17696640 aaagtgcagggaccaatgacacatttaaacctt 17696608  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34181515 - 34181547
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
34181515 aaagtgcagggaccaatgacacatttaaacctt 34181547  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31657771 - 31657807
Alignment:
1 aaagtgcagggaccaatgacacatctaaaccttattt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
31657771 aaagtgcagggaccaatgacacatttaaaccttattt 31657807  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6626550 - 6626589
Alignment:
1 aaagtgcagggaccaatgacacatctaaaccttatttttt 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
6626550 aaagtgcagggaccaatgacacatttaaaccttaattttt 6626589  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1795470 - 1795437
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
1795470 aaagtgcagggaccaatgacacatttaaacctta 1795437  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6607666 - 6607634
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
6607666 aaagtgcagggaccaatgacacatttaaacctt 6607634  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1614292 - 1614330
Alignment:
1 aaagtgcagggaccaatgacacatctaaaccttattttt 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
1614292 aaagtgcagggaccaatgacacatttaaaccttaatttt 1614330  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 322029 - 322062
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
322029 aaagtgcagggaccaatgacacatttaaacctta 322062  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11021630 - 11021663
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
11021630 aaagtgcagggaccaatgacacatttaaacctta 11021663  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47690322 - 47690289
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
47690322 aaagtgcagggaccaatgacacatttaaacctta 47690289  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8445040 - 8445072
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
8445040 aaagtgcagggaccaatgacacatttaaacctt 8445072  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15168943 - 15168911
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
15168943 aaagtgcagggaccaatgacacatttaaacctt 15168911  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 51892693 - 51892661
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
51892693 aaagtgcagggaccaatgacacatttaaacctt 51892661  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 3017559 - 3017597
Alignment:
5 tgcagggaccaatgacacatctaaaccttattttttcat 43  Q
    |||||||||||||||||||| |||||||| |||||||||    
3017559 tgcagggaccaatgacacatttaaacctttttttttcat 3017597  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34682309 - 34682277
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
34682309 aaagtgcagggaccaatgacacatttaaacctt 34682277  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 51437028 - 51436996
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
51437028 aaagtgcagggaccaatgacacatttaaacctt 51436996  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5907290 - 5907257
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
5907290 aaagtgcagggaccaatgacacatttaaacctta 5907257  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32792393 - 32792360
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
32792393 aaagtgcagggaccaatgacacatttaaacctta 32792360  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39412502 - 39412535
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
39412502 aaagtgcagggaccaatgacacatttaaacctta 39412535  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18673940 - 18673904
Alignment:
1 aaagtgcagggaccaatgacacatctaaaccttattt 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
18673940 aaagtgtagggaccaatgacacatttaaaccttattt 18673904  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23910325 - 23910293
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
23910325 aaagtgcagggaccaatgacacatttaaacctt 23910293  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27858418 - 27858386
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
27858418 aaagtgcagggaccaatgacacatttaaacctt 27858386  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38790272 - 38790304
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
38790272 aaagtgcagggaccaatgacacatttaaacctt 38790304  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5904843 - 5904810
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
5904843 aaagtgcagggaccaatgacacatttaaacctta 5904810  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38717713 - 38717746
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctta 34  Q
    |||||||||||||||||||||||| |||||||||    
38717713 aaagtgcagggaccaatgacacatttaaacctta 38717746  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36465966 - 36465934
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
36465966 aaagtgcagggaccaatgacacatttaaacctt 36465934  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39759303 - 39759335
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
39759303 aaagtgcagggaccaatgacacatttaaacctt 39759335  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47672030 - 47671998
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
47672030 aaagtgcagggaccaatgacacatttaaacctt 47671998  T

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Target: scaffold0170 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5838 - 5870
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
5838 aaagtgcagggaccaatgacacatttaaacctt 5870  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35722 - 35754
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
35722 aaagtgcagggaccaatgacacatttaaacctt 35754  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49747 - 49715
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
49747 aaagtgcagggaccaatgacacatttaaacctt 49715  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2098648 - 2098680
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
2098648 aaagtgcagggaccaatgacacatttaaacctt 2098680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4902653 - 4902621
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
4902653 aaagtgcagggaccaatgacacatttaaacctt 4902621  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4902981 - 4903013
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
4902981 aaagtgcagggaccaatgacacatttaaacctt 4903013  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4950051 - 4950019
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
4950051 aaagtgcagggaccaatgacacatttaaacctt 4950019  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16265615 - 16265583
Alignment:
1 aaagtgcagggaccaatgacacatctaaacctt 33  Q
    |||||||||||||||||||||||| ||||||||    
16265615 aaagtgcagggaccaatgacacatttaaacctt 16265583  T

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