View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_43 (Length: 249)
Name: NF17061_high_43
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_43 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 14608654 - 14608890
Alignment:
| Q |
13 |
aatatgtttccaattctttgtttaccggaggattcaatagtgtaacgagagctcatctaatggatagagtgattgattctgaggtgactcatcctcaaat |
112 |
Q |
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| T |
14608654 |
aatatgtttccaattctttgtttaccggaggattcaatagtgtaacaagagctcatctaatggatagagtgattgattctgaggtgactcatcctcaaat |
14608753 |
T |
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| Q |
113 |
ggcaggggctaaaggatctaaatgttcaatttgtgctggaaatattatgagggatgagaggggacatgatgtgactccatgtgagtgtaggtatgcatgt |
212 |
Q |
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| T |
14608754 |
ggcaggggctaaaggatctaaatgttcaatttgtgctggaaatattatgaaggatgagaggggacatgatgtgactccatgtgagtgtaggtatgcatgt |
14608853 |
T |
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| Q |
213 |
atatatgtgtgtcgaaattgatattttttattctttt |
249 |
Q |
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| T |
14608854 |
atatatgtgtgtcgaaattgatattttttattctttt |
14608890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 14599801 - 14599607
Alignment:
| Q |
13 |
aatatgtttccaattctttgtttaccggaggattcaatagtgtaacgagagctcatctaatggatagagtgattgattctgaggtgactcatcctcaaat |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||| || |||||||||||||| |
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| T |
14599801 |
aatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaagtaactcatcctcaaat |
14599702 |
T |
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| Q |
113 |
ggcaggggctaaaggatctaaatgttcaatttgtgctggaaatattatgagggatgagaggggacatgatgtgactccatgtgagtgtaggtatg |
207 |
Q |
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| T |
14599701 |
ggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagagatgaaagaggaaaagatgtcactccatgtgagtgtaggtatg |
14599607 |
T |
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