View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_5 (Length: 622)
Name: NF17061_high_5
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 29063403 - 29062805
Alignment:
| Q |
18 |
cttgttgttaggatcactagcacatgctttctctgaacaactagttttgttgaacaaagatttaagataagcttttgaagctttgagtttctgaccaaac |
117 |
Q |
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| T |
29063403 |
cttgttgttaggatcactagcacatgctttctctgaacaactagttttgttgaacaaagatttaagataagcttttgaagctttgagtttctgaccaaac |
29063304 |
T |
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| Q |
118 |
aataactgattcatcattttcagtttcttaggccaagatttattctttggtaaatcccttacaacaaaaccattcatttcaaatgagtactcatctggac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063303 |
aataactgattcatcattttcagtttcttaggccaagatttattctttggtaaatcccttacaacaaaaccattcatttcaaatgagtactcatctggac |
29063204 |
T |
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| Q |
218 |
tcacatcactgctaactctgcatgattctgaacctgaaatattgcaggtttcaagaggggtgtaactagcaaaagtgggaggtgtgaaaggaaaagtgtt |
317 |
Q |
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| T |
29063203 |
tcacatcactgctaactctgcatgattctgaacctgaaatattgcaggtttcaagagtggtgtaactagcaaaagtgggaggtgtgaaaggaaaagtgtt |
29063104 |
T |
|
| Q |
318 |
atcttctaaatttgtgttttctataagcttttgaaccatttgaagacgacgagggaggtgaagagggaggagttttcctttgtagaagagatcatcagca |
417 |
Q |
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| T |
29063103 |
atcttctaaatttgtgttttctagaagcttttgaaccatttgaagacgacgagggaggtgaagagggaggagttttcctttgtagaagagatcatcagca |
29063004 |
T |
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| Q |
418 |
ggggtagttttggaannnnnnncatttgagatagaactactcatttggaattcaaactctctggtattctttggtggagaaccaaaagaataagagaaga |
517 |
Q |
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| T |
29063003 |
ggggtagttttggaatttttttcatttgagatagaactactcatttggaattcaaactctctggtattctttggtggagaaccaaaagaataagagaaga |
29062904 |
T |
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| Q |
518 |
agtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatgaaccaaagtgacttgtttagtggccatttcaattttcatttgtgatgatg |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062903 |
agtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatgaaccaaagtgacttgtttagtggccatttcaattttcatttgtgatgatg |
29062805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 52287741 - 52287784
Alignment:
| Q |
373 |
aggtgaagagggaggagttttcctttgtagaagagatcatcagc |
416 |
Q |
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| T |
52287741 |
aggtgaagggggaggagttttcctttgtagaaaagctcatcagc |
52287784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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