View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_high_59 (Length: 203)
Name: NF17061_high_59
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_high_59 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 6505989 - 6505817
Alignment:
| Q |
12 |
gagatgaatggttcagatgatttgttactgttagcacaccctcttcatcttcaacttctgtcaaaaagtgacagtgatgtaactgttcttgatgatttca |
111 |
Q |
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| T |
6505989 |
gagaagaatgtttcaggtgatttgttattattagcacaccctcttcatcttcaacttctgtcaaaaagtgagagtgatgtaactgttcttgatgatttca |
6505890 |
T |
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| Q |
112 |
agtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaacagaacctgtttc |
184 |
Q |
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| T |
6505889 |
agtatacaagcattgatggtgaccttgttggtgttgttggtgattcatggattttgaaaacagaacctgtttc |
6505817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 6515773 - 6515933
Alignment:
| Q |
12 |
gagatgaatggttcagatgatttgttactgttagcacaccctcttcatcttcaacttctgtcaaaaagtgacagtgatgtaactgttcttgatgatttca |
111 |
Q |
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| T |
6515773 |
gagaagaaaggttcaggtgatttgttattgttagcacaccctcttcatattcaacttttatctaaaagtaaaagtgatgtaactgttttggatgatttca |
6515872 |
T |
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| Q |
112 |
agtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaac |
172 |
Q |
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| T |
6515873 |
agtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggattttgaaaac |
6515933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 6520331 - 6520411
Alignment:
| Q |
104 |
tgatttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaacagaacctgtttc |
184 |
Q |
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| T |
6520331 |
tgattttaagtataaaagcattgatggagaccttgttggtgtcattggtgattcatggtttttgaaaactgatcctgtttc |
6520411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 6497091 - 6497008
Alignment:
| Q |
100 |
ttgatgatttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaacagaacctgttt |
183 |
Q |
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| T |
6497091 |
ttgatgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgttt |
6497008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 6461583 - 6461663
Alignment:
| Q |
102 |
gatgatttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaacagaacctgtt |
182 |
Q |
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| T |
6461583 |
gatgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgtt |
6461663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 6472808 - 6472887
Alignment:
| Q |
105 |
gatttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaacagaacctgtttc |
184 |
Q |
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| T |
6472808 |
gattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttc |
6472887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 6457839 - 6457722
Alignment:
| Q |
55 |
ttcatcttcaacttctgtcaaaaagtgacagtgatgtaactgttcttgatgatttcaagtatacaagcattgatggagaccttgttggtgtggttggtga |
154 |
Q |
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|||||||||||||| |||| ||||||| ||||||||||||| ||| ||||||| |||||| ||||||||| || || ||||||||||| ||||| || |
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| T |
6457839 |
ttcatcttcaacttttgtctgcaagtgactgtgatgtaactgtgcttcatgatttgaagtatcaaagcattgacggcgagcttgttggtgttgttggaga |
6457740 |
T |
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| Q |
155 |
ttcatggattttgaaaac |
172 |
Q |
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| T |
6457739 |
ctcatggttattgaaaac |
6457722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 6465748 - 6465679
Alignment:
| Q |
103 |
atgatttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaac |
172 |
Q |
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| T |
6465748 |
atgattttaagtatagaagtattgatggtgatcttgttggtgttgttggtgattcatggttgttgaaaac |
6465679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 13035513 - 13035574
Alignment:
| Q |
111 |
aagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaac |
172 |
Q |
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| T |
13035513 |
aagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaac |
13035574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 6528613 - 6528545
Alignment:
| Q |
104 |
tgatttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaac |
172 |
Q |
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|||||||||||||| |||||||||||| || |||||||| | |||| |||||| |||||||||||||| |
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| T |
6528613 |
tgatttcaagtataaaagcattgatggcgatcttgttggcattgttgctgattcgtggattttgaaaac |
6528545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 1841655 - 1841721
Alignment:
| Q |
106 |
atttcaagtatacaagcattgatggagaccttgttggtgtggttggtgattcatggattttgaaaac |
172 |
Q |
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| T |
1841655 |
attttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaac |
1841721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 4046710 - 4046578
Alignment:
| Q |
43 |
tagcacaccctcttcatcttcaacttctgtcaaaaagtgacagtgatg---taactgttcttgatgatttcaagtatacaagcattgatggagaccttgt |
139 |
Q |
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||||||||||||||||| || | ||| | ||||||||| ||| | ||| | ||||||||| ||||||| ||||||| ||| ||||||| || ||||| |
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| T |
4046710 |
tagcacaccctcttcatgttaagcttttatcaaaaagtaacaatcatggtgttactgttcttaatgattttaagtataaaagtgttgatggtgatcttgt |
4046611 |
T |
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| Q |
140 |
tggtgtggttggtgattcatggattttgaaaac |
172 |
Q |
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| T |
4046610 |
tggtgttgttggaaattcatggaatttgaaaac |
4046578 |
T |
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