View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17061_low_10 (Length: 521)
Name: NF17061_low_10
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 31459037 - 31458572
Alignment:
| Q |
18 |
agcaaatacataaaatgaaaactgagaaaagttgtatcatatcatgtcactcacaaatttgtgagattctttagattgccaaatgcttctggtattgtcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31459037 |
agcaaatacataaaatgaaaactgagaaaatttgtatcatatcatgtcactcacaaatttgtgagattctttagattgccaaatgcttctggtattgtcc |
31458938 |
T |
|
| Q |
118 |
ctgtgaaattatttgcagaaagcattctgcagtgtacagaaaaatgttaagaatgtgaaatcatagatattttatcgatttatttttgatacattgtcgc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31458937 |
ctgtaaaattatttgcagaaagcattctgcagtgtacagaaaaaagttaggaatgtgaaatcatagatattttatcgatttatttttgatacattgtcgc |
31458838 |
T |
|
| Q |
218 |
tgtaaaactttttaagttgttatattcgatcataatcaatcgtatatgcgacttttaagttagtaaaattaaagtcaaacatttttaatgatccaacaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31458837 |
ggtaaaactttttaagttgttatattcgatcataatcaatcgtatatgcgaattttaagttagtaaaattaaagtcaaacatttt--------------- |
31458753 |
T |
|
| Q |
318 |
tataaccgattgatagtgtaaaaaacatcaacactaaccgtgcatgtcatttaaatccttgatttatttttaagtaataaatcgacggtcaatataaagg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31458752 |
--taaccgattgatagtgtaaaaaacatcaacactaatcgtgcatgtcatttaaatccttgatttatttttaagtaataaatcgacggtcaatataaagg |
31458655 |
T |
|
| Q |
418 |
atcgccagtgtacccttttcaacgagatataacttagattaggccaatacatataaaataaaaatgactaaaagaaacaagtctcaca |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31458654 |
atcgccagtgtacccttttcaacgagatataccttagattaggc-----catataaaataaaaatgactaaaagaaacaagtctcaca |
31458572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 31650332 - 31650295
Alignment:
| Q |
285 |
attaaagtcaaacatttttaatgatccaacaattataa |
322 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31650332 |
attaaagtcaaacatttttaatgatccgacaattataa |
31650295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University