View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_11 (Length: 473)

Name: NF17061_low_11
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_11
NF17061_low_11
[»] chr1 (2 HSPs)
chr1 (12-463)||(16965891-16966342)
chr1 (12-451)||(16955394-16955824)
[»] chr6 (2 HSPs)
chr6 (83-158)||(5569437-5569512)
chr6 (83-158)||(5574415-5574490)
[»] chr3 (7 HSPs)
chr3 (34-176)||(30227291-30227433)
chr3 (86-176)||(30214714-30214804)
chr3 (74-167)||(30201156-30201249)
chr3 (133-175)||(36333938-36333980)
chr3 (77-158)||(29712966-29713047)
chr3 (122-171)||(30223128-30223177)
chr3 (83-139)||(29856838-29856894)
[»] chr8 (1 HSPs)
chr8 (33-167)||(14934506-14934640)
[»] chr5 (2 HSPs)
chr5 (35-157)||(25784296-25784418)
chr5 (35-157)||(16053597-16053719)
[»] chr7 (2 HSPs)
chr7 (34-171)||(16644741-16644878)
chr7 (34-171)||(17619102-17619239)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 16966342 - 16965891
Alignment:
Q  12 aaagggaaagcacagcagctgagccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaag 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16966342 aaagggaaagcacagcaactgagccaaattggcttgaactacccagagatttgacaataaatattctccagaggcttgatactattgaaatagtcacaag 16966243  T
Q  112 tgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatatggcgcactatttcaatgatcctgtcctcacactatgactaccggcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||  ||||||||||||||  |||||    
T  16966242 tgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatgtggcacactatttctatgatcctgtgttcacactatgactattggcaa 16966143  T
Q  212 tggttacgcatggatttggcgacgatttgtcgctattcagttgagcgaagttgtggtcaactagaaggcattgatattgacttctctttaactgatgatc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16966142 tggttacgcatggatttggcgacgatttgtcgctattcagttgagcgaagttgtggtcaactagaaggcattgatattgacttctctttaactgatgatc 16966043  T
Q  312 tctttaaatacatatctgattggtgattaactttgattactttaaacgctttcagttattaatgtctttttgcttaatcatgcatttgattctattgnnn 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  16966042 tctttaaatacatatctgattggtgattaactttgattactttaaacgctttcagttattaatgtctttttgcttaatcatgcatttgattctattgttc 16965943  T
Q  412 nnnncttgacaaacttatttctattgctgagcatatttttcttgaacctttt 463  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16965942 ttttcttgacaaacttatttctattgctgagcatatttttcttgaacctttt 16965891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 451
Target Start/End: Complemental strand, 16955824 - 16955394
Alignment:
Q  12 aaagggaaagcacagcagctgagccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaag 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  16955824 aaagggaaagcacagcagcagagccaaattggcttgaactaccaaaagatttggcaataaacattctccagaggcttgatactattgaaattgtcacaag 16955725  T
Q  112 tgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatatggcgcactatttcaatgatcctgtcctcacactatgactaccggcaa 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||  ||| ||||||||| |||| | | ||    
T  16955724 tgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctctcatgtggcgcactatttctatgatcaagtcttcacactatcactatccggaa 16955625  T
Q  212 tggttacgcatggatttggcgacgatttgtcgctattcagttgagcgaagttgtggtcaactagaaggcattgatattgacttctctttaactgatgatc 311  Q
    |||||||  |||||||||| || |||||| |||||| |||||||||||||||||||||||||  |||  ||||||||||| || | |||||| |||||||    
T  16955624 tggttacatatggatttggagatgatttgccgctatgcagttgagcgaagttgtggtcaacttcaagagattgatattgagttttttttaaccgatgatc 16955525  T
Q  312 tctttaaatacatatctgattggtgattaactttgattactttaaacgctttcagttattaatgtctttttgcttaatcatgcatttgattctattgnnn 411  Q
    |||||||||||||| ||||||||||||||         || ||| || ||||||  |||||||||||||||||||||||||| |||||||||||||        
T  16955524 tctttaaatacatagctgattggtgatta---------accttagactctttcaagtattaatgtctttttgcttaatcatgtatttgattctattttat 16955434  T
Q  412 nnnncttgacaaacttatttctattgctgagcatattttt 451  Q
        ||| | |||||||||||||||| ||| |||||||||    
T  16955433 ttttctttataaacttatttctattgttgaacatattttt 16955394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 5569512 - 5569437
Alignment:
Q  83 aggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctc 158  Q
    |||||||||||||||||  |||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  5569512 aggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 5569437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 5574490 - 5574415
Alignment:
Q  83 aggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctc 158  Q
    |||||||||||||||||  |||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  5574490 aggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 5574415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 30227291 - 30227433
Alignment:
Q  34 gccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtccttta 133  Q
    |||||||||||||||||| || |||||  |  ||| ||| ||||| || ||||||| ||| || || || || ||||||| |||||||||||||||| ||    
T  30227291 gccaaattggcttgaacttcctagagacatcacaacaaacattcttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcctcta 30227390  T
Q  134 tggtggaatatttgcaaggatcctcacatatggcgcactattt 176  Q
    | |||||| |||||||||||||||| ||| |||||||| ||||    
T  30227391 tagtggaacatttgcaaggatcctctcatgtggcgcaccattt 30227433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 30214714 - 30214804
Alignment:
Q  86 cttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatatggcgcactattt 176  Q
    |||| ||| ||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||  ||||||| ||||||||    
T  30214714 cttggtaccattgagattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcttatatggcacactattt 30214804  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 30201156 - 30201249
Alignment:
Q  74 attctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctcacatatggc 167  Q
    ||||| || ||||||  ||| |||||||| || ||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||| ||||    
T  30201156 attcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctctcatgtggc 30201249  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 36333980 - 36333938
Alignment:
Q  133 atggtggaatatttgcaaggatcctcacatatggcgcactatt 175  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||    
T  36333980 atggtggaacatttgcaaggatcctctcatgtggcgcactatt 36333938  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 29712966 - 29713047
Alignment:
Q  77 ctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctc 158  Q
    ||||| || ||||||||| ||||||| || ||||||| | || | || ||| |||| ||| |||||||||||||||||||||    
T  29712966 ctccaaagacttgatactgttgaaattgtgacaagtgcacgtaatgtttgttctttgtggcggaatatttgcaaggatcctc 29713047  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 30223128 - 30223177
Alignment:
Q  122 gtgtgtcctttatggtggaatatttgcaaggatcctcacatatggcgcac 171  Q
    ||||||||||  |||||||| |||||||||||||||| ||| ||||||||    
T  30223128 gtgtgtccttattggtggaacatttgcaaggatcctctcatgtggcgcac 30223177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 29856838 - 29856894
Alignment:
Q  83 aggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtgg 139  Q
    ||||||||||| |||||||| || | ||||| ||||||||| |||||| ||||||||    
T  29856838 aggcttgatacaattgaaatcgtgaaaagtgcatgtcaagtttgtcctctatggtgg 29856894  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 14934640 - 14934506
Alignment:
Q  33 agccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtccttt 132  Q
    ||||||||||||||||||| || |||||| || |   ||| |||||||| ||||||| | | ||||||||| |  | |||| |||||||||||| ||| |    
T  14934640 agccaaattggcttgaacttccaagagatgtgactgcaaacattctccaaaggcttggtgccattgaaatattggctagtgcatgtcaagtgtgccctct 14934541  T
Q  133 atggtggaatatttgcaaggatcctcacatatggc 167  Q
     ||||||||||||| ||||||||||||||| ||||    
T  14934540 ttggtggaatattttcaaggatcctcacatgtggc 14934506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 25784418 - 25784296
Alignment:
Q  35 ccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttat 134  Q
    ||||||||||||||||| || |||||| || |||  || ||| |||  |||||| ||||  | ||  |||| |||||||||||||||||||| ||| |||    
T  25784418 ccaaattggcttgaacttccaagagatgtgacaaccaacattttccgaaggcttaataccttcgacgtagttacaagtgtatgtcaagtgtgccctctat 25784319  T
Q  135 ggtggaatatttgcaaggatcct 157  Q
    |||||||||| || || ||||||    
T  25784318 ggtggaatatatgtaaagatcct 25784296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 16053719 - 16053597
Alignment:
Q  35 ccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttat 134  Q
    |||||||||||||| || || ||||||||| ||  |||||| || |||||||||| | |  |||||||  | ||||||| |||   |||||| ||| | |    
T  16053719 ccaaattggcttgatcttcctagagatttgacatcaaatatccttcagaggcttggtgcatttgaaattttaacaagtgcatgcggagtgtgccctcttt 16053620  T
Q  135 ggtggaatatttgcaaggatcct 157  Q
    ||||||| |||||||||||||||    
T  16053619 ggtggaacatttgcaaggatcct 16053597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 16644878 - 16644741
Alignment:
Q  34 gccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtccttta 133  Q
    ||||||||||||||| || || |||||| |  ||  ||| ||||| || |||||| || |  ||||||| || ||||||| ||  | ||||||| || ||    
T  16644878 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 16644779  T
Q  134 tggtggaatatttgcaaggatcctcacatatggcgcac 171  Q
    |||||||| ||||||||||| |||| ||| ||||||||    
T  16644778 tggtggaacatttgcaaggaacctctcatgtggcgcac 16644741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 17619239 - 17619102
Alignment:
Q  34 gccaaattggcttgaactacccagagatttggcaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtccttta 133  Q
    ||||||||||||||| || || |||||| |  ||  ||| ||||| || |||||| || |  ||||||| || ||||||| ||  | ||||||| || ||    
T  17619239 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 17619140  T
Q  134 tggtggaatatttgcaaggatcctcacatatggcgcac 171  Q
    |||||||| ||||||||||| |||| ||| ||||||||    
T  17619139 tggtggaacatttgcaaggaacctctcatgtggcgcac 17619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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