View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_15 (Length: 435)

Name: NF17061_low_15
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_15
NF17061_low_15
[»] chr7 (2 HSPs)
chr7 (11-418)||(45676053-45676461)
chr7 (87-208)||(45437737-45437858)
[»] chr1 (6 HSPs)
chr1 (84-226)||(37962620-37962762)
chr1 (325-418)||(37962857-37962950)
chr1 (325-398)||(51044460-51044533)
chr1 (87-205)||(38269740-38269858)
chr1 (126-222)||(51044130-51044226)
chr1 (339-398)||(16127399-16127458)
[»] chr8 (7 HSPs)
chr8 (326-391)||(5849863-5849928)
chr8 (326-391)||(5921232-5921297)
chr8 (326-391)||(5949124-5949189)
chr8 (334-391)||(5960389-5960446)
chr8 (326-391)||(5984652-5984717)
chr8 (326-388)||(5843124-5843186)
chr8 (326-391)||(5887260-5887325)
[»] chr3 (2 HSPs)
chr3 (325-398)||(34626693-34626766)
chr3 (339-398)||(44674042-44674101)
[»] chr4 (2 HSPs)
chr4 (339-398)||(43560541-43560600)
chr4 (342-407)||(5690640-5690705)
[»] chr5 (2 HSPs)
chr5 (336-386)||(2590846-2590896)
chr5 (327-397)||(12551966-12552036)
[»] scaffold0251 (1 HSPs)
scaffold0251 (335-383)||(9869-9917)
[»] scaffold0008 (1 HSPs)
scaffold0008 (336-383)||(262048-262095)
[»] chr2 (2 HSPs)
chr2 (339-397)||(28205964-28206022)
chr2 (331-391)||(42789002-42789062)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 45676461 - 45676053
Alignment:
Q  11 agaatatttccacgttggttctgacacaaagagtttnnnnnnnn-catttgaaagaggttaattgaagaaagtgcacatgggaagacattcttgttgcta 109  Q
    ||||||||||||||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45676461 agaatatttccacgttggttctgacacaaagagtttaaaaaaaaacatttgatagaggttaattgaagaaagtgcacatgggaagacattcttgttgcta 45676362  T
Q  110 caagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcagttcca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676361 caagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcagttcca 45676262  T
Q  210 aaattagctggtacaaattacttacataccaataattatatcatgttaattaatgtcatcatattatattgttacacataatgagtgcacaattaattaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676261 aaattagctggtacaaattacttacataccaataattatatcatgttaattaatgtcatcatattatattgttacacataatgagtgcacaattaattaa 45676162  T
Q  310 aattatcatatatgtcaggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagaggagcattctcaga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676161 aattatcatatatgtcaggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagaggagcattctcaga 45676062  T
Q  410 gcaagaaga 418  Q
    |||||||||    
T  45676061 gcaagaaga 45676053  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 45437737 - 45437858
Alignment:
Q  87 atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtc 186  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| ||||| || || || |||||||| ||||||||| |||| || ||| ||||||    
T  45437737 atgggaagacactcttgttgctacaagcagaagcttaggaaaggtctatggtcacctgaggaggatgaaaaacttttgaatcatattactaaatatggtc 45437836  T
Q  187 atggatgttggagctcagttcc 208  Q
    ||||||||||||| ||||||||    
T  45437837 atggatgttggagttcagttcc 45437858  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 37962620 - 37962762
Alignment:
Q  84 cacatgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatg 183  Q
    |||||||||||||| ||||| ||||||||||||||  |  | ||||| |||||||| || || |||||||| |||||||||||||| || ||||||||||    
T  37962620 cacatgggaagacactcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaagcttttgaattacattaccaaacatg 37962719  T
Q  184 gtcatggatgttggagctcagttccaaaattagctggtacaaa 226  Q
    |||||||||||||||| ||||| || ||| |||| ||||||||    
T  37962720 gtcatggatgttggagttcagtccccaaactagcaggtacaaa 37962762  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 37962857 - 37962950
Alignment:
Q  325 caggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagaggagcattctcagagcaagaaga 418  Q
    |||||||||| ||||||||||||||||| || || ||||||||||||||  | |||||||||||||| ||||||||||||||| | ||||||||    
T  37962857 caggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaaagaggagcattctcacaacaagaaga 37962950  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 51044460 - 51044533
Alignment:
Q  325 caggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 398  Q
    |||| ||||| |||||||| ||||| |||||||||||||||||||| ||| | |||||||||||||||||||||    
T  51044460 cagggttgcaaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaagagagga 51044533  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 38269858 - 38269740
Alignment:
Q  87 atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtc 186  Q
    |||||||| || || ||||| ||||||||||||||| | |||||||| ||||| ||||||||||||||||| ||  |||   |||| || ||  ||||||    
T  38269858 atgggaaggcactcatgttgttacaagcagaagcttaggaaaggtctatggtcaccagaagaagatgaaaaactactgaggcatataacaaagtatggtc 38269759  T
Q  187 atggatgttggagctcagt 205  Q
    ||||||||||||| |||||    
T  38269758 atggatgttggagttcagt 38269740  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 51044130 - 51044226
Alignment:
Q  126 aaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcagttccaaaattagctggta 222  Q
    |||||| | |||||||| ||||||||||| |||||||| ||||| || ||||    ||||  |||||||||||| |||||||| ||| |||||||||    
T  51044130 aaaggtttatggtcccctgaagaagatgataagcttttcaattacataaccatgtttggtgttggatgttggagttcagttcctaaactagctggta 51044226  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 16127458 - 16127399
Alignment:
Q  339 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 398  Q
    ||||| ||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||    
T  16127458 tgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagagga 16127399  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 5849928 - 5849863
Alignment:
Q  326 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    |||| ||||||| ||||| || ||||||||||| |||||||||||||||||||| |||||||||||    
T  5849928 aggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaa 5849863  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 5921297 - 5921232
Alignment:
Q  326 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5921297 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 5921232  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 5949189 - 5949124
Alignment:
Q  326 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5949189 aggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaa 5949124  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 5960446 - 5960389
Alignment:
Q  334 agaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  5960446 agagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaa 5960389  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 5984717 - 5984652
Alignment:
Q  326 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    |||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5984717 aggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 5984652  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 5843186 - 5843124
Alignment:
Q  326 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgattt 388  Q
    |||| ||||||| ||||| || ||||||||||| |||||||||||||||||||| ||||||||    
T  5843186 aggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgattt 5843124  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 5887325 - 5887260
Alignment:
Q  326 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    |||| ||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  5887325 aggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 5887260  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 34626766 - 34626693
Alignment:
Q  325 caggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 398  Q
    |||| ||||| || ||||| ||||||||||||||||||||||| || ||||| || ||||||||||||||||||    
T  34626766 cagggttgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaagagagga 34626693  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 44674042 - 44674101
Alignment:
Q  339 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 398  Q
    ||||| |||||||| |||||||||||||||||||| ||||| |||||| | |||||||||    
T  44674042 tgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagagga 44674101  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 43560600 - 43560541
Alignment:
Q  339 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 398  Q
    ||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||||||    
T  43560600 tgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagagga 43560541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 5690640 - 5690705
Alignment:
Q  342 gggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagaggagcattctca 407  Q
    |||||||| || || || ||||||||||||||  ||| |||||||||||| |||||||||||||||    
T  5690640 gggaagagatgcaggttaagatggataaattacttaacgcctgatttgaaaagaggagcattctca 5690705  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 2590846 - 2590896
Alignment:
Q  336 aggtgtgggaagagttgtagattgagatggataaattatctaaggcctgat 386  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  2590846 aggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 12551966 - 12552036
Alignment:
Q  327 ggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagg 397  Q
    |||||| | |||||||||||||||||||| || || |||| ||||||| | ||||||||| | ||||||||    
T  12551966 ggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgatatcaagagagg 12552036  T

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Target: scaffold0251 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 9869 - 9917
Alignment:
Q  335 gaggtgtgggaagagttgtagattgagatggataaattatctaaggcct 383  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  9869 gaggtgtgggaagagttgtagattgaggtggttgaattatctaaggcct 9917  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 262095 - 262048
Alignment:
Q  336 aggtgtgggaagagttgtagattgagatggataaattatctaaggcct 383  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||    
T  262095 aggtgtgggaagagttgtagattgaggtggctgaattatctaaggcct 262048  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 28205964 - 28206022
Alignment:
Q  339 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagg 397  Q
    |||||||| |||||| | ||||||||||| |||||||| ||||||||||| ||||||||    
T  28205964 tgtgggaaaagttgtcgtttgagatggatcaattatcttaggcctgatttaaagagagg 28206022  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 42789062 - 42789002
Alignment:
Q  331 tgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 391  Q
    ||||||| ||||| || ||||| || |||||||||||||||||| |||| |||||||||||    
T  42789062 tgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaa 42789002  T

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