View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_16 (Length: 427)
Name: NF17061_low_16
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 41895214 - 41894819
Alignment:
| Q |
15 |
agcataggagtatatggaattggaaatggaaagggccatcttctcttttgtctttgtcaacagaaatatatatacgtgggactttccatcttgttggtgg |
114 |
Q |
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| T |
41895214 |
agcataggagtatatggatttggaaatggaaagggccatcttctcttttgtctttgtcaacagaaatatatatacgtgggactttccatcttgttggtgg |
41895115 |
T |
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| Q |
115 |
ggtatattatccaggtcaatatagnnnnnnnnctttaaaatagttcaaatggg-tgctcttatatactgtttaaggtcaaaattnnnnnnnccattcttc |
213 |
Q |
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| T |
41895114 |
ggtatattatccaggtcaatatagttttttttctttaaaataattcaaatggggtgctcttatatactgtttaaggtcaaaattaaaaaaaccattcttc |
41895015 |
T |
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| Q |
214 |
tttagttgaagccagtaatatttatatttttacatcattatcttcaaactggaatcaaattcgaatgattctagtcaaacaatggtagagtcatttcatg |
313 |
Q |
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| T |
41895014 |
tttagttgaagccagtaatatttatatttttacatcattatcttcaaactggaatcaaattcgaatgattctagtcaaacaatggtagagtcatttcatg |
41894915 |
T |
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| Q |
314 |
atatccggttgataaggtaaacttcattttcaaactttattgatagcgttgtatgtattgtcaacaaggtgacatgttcaataatcttctacttct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41894914 |
atatccggttgataaggtaaacttcattttcaaactttattgatagcgttgtatgtattgtcaacaaggtgacatgttcaataatcttctacttct |
41894819 |
T |
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