View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17061_low_18 (Length: 417)
Name: NF17061_low_18
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 1353868 - 1354256
Alignment:
| Q |
1 |
actttagatttcgctttaggtttcaataagtgttgaattgctcttactaacattaactatgttagctttcgttttaggcttcgataaatgttgaagatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||| |
|
|
| T |
1353868 |
actttagatttcgctttaggtttcaataagcattgaattgctcttactaacattaactatgttagatttcgttttagggttcgataagtgttaaagatat |
1353967 |
T |
|
| Q |
101 |
tttataatggatttgttaaacattttgtgatgagtggaactggataattgttcttctcccatctgtttttgttaattccatcaaagtagtcgagcgtgag |
200 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
1353968 |
tttataatgggtatgttaaatattttgtgatgagtggaacttgataattgttcttctcccatctgtttttgttaatcccgtcaaagtagtcgagcgtgag |
1354067 |
T |
|
| Q |
201 |
tctcacacatgtgtatttttcagatgggagaagagcaattctcgtgaaactatgcaacaatgttgtgaagtacagtagctgaattatgataactgaaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||| | || |||| |
|
|
| T |
1354068 |
tctcacacatgtgtatttttcagatgggagaagagcaattctcgtgaaactgtgcaacgatattgtgaagtaca-----------atggt---tggaatt |
1354153 |
T |
|
| Q |
301 |
gtgataactcgttccgtatggatagcaggagctgatggagctgctaatagtgtatttcatttcttggaatctaagcacatcttgtgtttggcaatgtcct |
400 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1354154 |
gtgataactctttccgtatggataggaggagctgatggagttgctaatagtgtatctcatttcttggaatctaagcacatcttgtgtttggcaatgtcct |
1354253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 22842147 - 22842206
Alignment:
| Q |
143 |
gataattgttcttctcccatctgtttttgttaatt-ccatcaaagtagtcgagcgtgagt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||| |
|
|
| T |
22842147 |
gataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagt |
22842206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 9979738 - 9979685
Alignment:
| Q |
149 |
tgttcttctcccatctgtttttgttaattc-catcaaagtagtcgagcgtgagt |
201 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
9979738 |
tgttcttctcccatctgtttttgttcattcatgtcaaaatagtcgagcgtgagt |
9979685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 37688820 - 37688848
Alignment:
| Q |
145 |
taattgttcttctcccatctgtttttgtt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37688820 |
taattgttcttctcccatctgtttttgtt |
37688848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University