View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_2 (Length: 798)
Name: NF17061_low_2
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 2 - 678
Target Start/End: Original strand, 45691295 - 45691967
Alignment:
| Q |
2 |
ggatgtcgaagaaaataaggttatcaaaataattagctgaagatttaaaaggtctacgaacaaggtttgattaatcaggaagttaaatcagacctcaaaa |
101 |
Q |
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| T |
45691295 |
ggatggcgaaaaaaataaggttatcaaaataattagctgaagatttaaaaggtctacgaacaagctttgattaatcaggaagttaaatcagacctcaaaa |
45691394 |
T |
|
| Q |
102 |
aagcataatattctgctcctatcagtattgaggaaaaagttgctacaaatgatgataaggagcacttgatcctctgctaaaggatcttcaagagaggcag |
201 |
Q |
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| T |
45691395 |
aagcagaatattctgctccaatcagtattgaggaaaaagttgctacaaatgatgataaggagcacttgatcct--gctaaaggatcttcaagagaggcag |
45691492 |
T |
|
| Q |
202 |
atgatgaaatcaaaaagattgaggcaatgacatctgcaaatgaagtgggcgatgtgaaggctgagaatttaagag-tgataaaccttcttattacagcat |
300 |
Q |
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| T |
45691493 |
atgatgaaatcaagaagattgaggcaatgacatctgcaaatgaagtgggcgatgtgaaggctgagagtgtaagagatgataaaccttcttattacagcat |
45691592 |
T |
|
| Q |
301 |
gaagagaacgatacagctcaacatcaaactaaatcatggttacttagattgcttgtattccaagctactactagttagttaattgatacagctcagcatg |
400 |
Q |
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| T |
45691593 |
gaagagaatgatacagctcaacatcaaactaaatcatggttacttagattgcttgtattccaagctactactagttagttaattgatacagctcagcatg |
45691692 |
T |
|
| Q |
401 |
aagaggaaagtgattcaacaaaaacatcaaaggaccttcctaaggaaacctcaatgaaggcaacacaaaagcaaacaaattacattatatcacaagcgaa |
500 |
Q |
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| T |
45691693 |
aagaggaaagtgattcaacaaaaaaatcaaaggaccttcctaaggaaacctcaatgaaggcaacacaaaagcaaacaaattacattatatcacaagcgaa |
45691792 |
T |
|
| Q |
501 |
agacagacgatattaaaatcaagtaatgagtaatatgatgatagacttaacaagttcccgtgatttagtaacatgctttctttctcaccgttgcgatgca |
600 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45691793 |
agacagacgatattaaaatcaagtaatgagtaat---atgatagacttaacaagttcccgtgatttagtaacatgctttctttctcaccgttgcgatgca |
45691889 |
T |
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| Q |
601 |
tagcattagcatacttgctggtttatatactgtgttattttctgttaattttgtttgcatgcaaaggggtgtgcagtg |
678 |
Q |
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| T |
45691890 |
tagcattagcatacttgctggtttctatactgtgttattttctgttaattttgtttgcatgcaaagggttgtgcagtg |
45691967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 730 - 781
Target Start/End: Original strand, 45691961 - 45692012
Alignment:
| Q |
730 |
tgcagtgatgtgaatcacttccaaagaatctgaatacatgttggcaggaaac |
781 |
Q |
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| T |
45691961 |
tgcagtgatgtgaatcacttccaaagaatctgaatacatgttggcaggaaac |
45692012 |
T |
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