View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17061_low_20 (Length: 391)
Name: NF17061_low_20
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17061_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 4780747 - 4780871
Alignment:
| Q |
250 |
tgaataatataaaaatttcattttaatgtacatagtatttaagtaaagagtaatagtttgatgccccttaaaaaatacaattctagaaagttgttcatcc |
349 |
Q |
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| T |
4780747 |
tgaataatataaaaatttcattttaatgtacatagtatttaagtaaaaagtaatagtttgatgccccttaaaaaatacaattctagaaagttgttcatcc |
4780846 |
T |
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| Q |
350 |
cagccatgttgagggatgacgagat |
374 |
Q |
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| T |
4780847 |
caaccatgttgagggatgacgagat |
4780871 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 4780623 - 4780715
Alignment:
| Q |
74 |
ttgtaaaactaactaaattgtctatatttatcaaatattttactaattccatcacatatcaacacccattcctgtttaaaaaacaacatgcat |
166 |
Q |
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| T |
4780623 |
ttgtaaaactagctagattgtctatattaatcaaatattttactagttctataaaatatcaacatgcatgcctgttcaaaaaacaacatgcat |
4780715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4780156 - 4780236
Alignment:
| Q |
1 |
tagtggttttaaaagattaacccagtttattctccatttcattaacaagtatttttatatcatcgacaactaattgtaaaa |
81 |
Q |
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| T |
4780156 |
tagtgtttttaatagatcaaccacatttattctccatttcattgacaattgtttttatagtatccacaactatttgtaaaa |
4780236 |
T |
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