View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17061_low_21 (Length: 385)

Name: NF17061_low_21
Description: NF17061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17061_low_21
NF17061_low_21
[»] chr6 (2 HSPs)
chr6 (123-371)||(387013-387277)
chr6 (24-126)||(386879-386985)
[»] chr2 (1 HSPs)
chr2 (5-81)||(4091448-4091524)
[»] chr5 (7 HSPs)
chr5 (238-289)||(29821033-29821084)
chr5 (158-222)||(29597269-29597334)
chr5 (179-224)||(29820924-29820969)
chr5 (228-286)||(29594038-29594096)
chr5 (179-224)||(29642652-29642697)
chr5 (222-286)||(29597383-29597447)
chr5 (222-286)||(29642540-29642604)
[»] chr7 (3 HSPs)
chr7 (1-81)||(48693190-48693270)
chr7 (1-81)||(31251819-31251900)
chr7 (180-224)||(19325706-19325750)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-88)||(42002-42088)
[»] chr8 (2 HSPs)
chr8 (3-43)||(32049128-32049168)
chr8 (1-91)||(38276325-38276416)
[»] chr4 (1 HSPs)
chr4 (1-80)||(16645965-16646042)
[»] chr3 (1 HSPs)
chr3 (5-81)||(39400043-39400119)
[»] chr1 (1 HSPs)
chr1 (1-81)||(5953287-5953367)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 123 - 371
Target Start/End: Original strand, 387013 - 387277
Alignment:
Q  123 atgtgacgggaaatgtgtgcctaaacgaatttattgcaatcttttactatgaaat-----------------gacatgaattcaaacaaattcgaacaag 205  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||                 ||||||||||||| ||||||||||||||    
T  387013 atgtgactggaaatgcgtgcctaaacgaatttattgcaatcttttactatgaaatgacatggatttcaaaatgacatgaattcaagcaaattcgaacaag 387112  T
Q  206 taaatcgttgtaaagaaacacaacattattgcattaccaatagattgctttactctattatttttcaaattatagagaattactaggtgaacaccctaac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  387113 taaatcgttgtaaagaaacacaacattattgcattaccaatagattgctttagtctattatttttcaaattatagagaattactaggtgaacaccctaac 387212  T
Q  306 aagtaactaatttattcatttcttgttttcttcccctttcaatactggttgagtctatcaacatat 371  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  387213 aagtaactaatttattcatttcttgttttc-tgccctttcaatactggttgagtctatcaacatat 387277  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 386879 - 386985
Alignment:
Q  24 ccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaagggggagagcaatac----atacaggagagtgatatgcaaaaata 119  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||    |||||||||||||||| ||  |||||    
T  386879 ccgagcatgagttaactcacactgggcatttttaagagagtgaacaattttgaaagggagagagcaatactcttatacaggagagtgatacgccgaaata 386978  T
Q  120 cgcatgt 126  Q
    |||||||    
T  386979 cgcatgt 386985  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 4091448 - 4091524
Alignment:
Q  5 ttaactcatgttgaaaaagccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaaggg 81  Q
    |||||||| |||||||||| |||| |||||||||||||||  | ||||||||||| |||||||||||||| ||||||    
T  4091448 ttaactcacgttgaaaaagtcgagtatgagttaactcacatcgaacatttttaagggaatgaacaattttaaaaggg 4091524  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 29821033 - 29821084
Alignment:
Q  238 attaccaatagattgctttactctattatttttcaaattatagagaattact 289  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  29821033 attaccaatagcttgctttactctattatttttcaaatcatagagaattact 29821084  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 29597269 - 29597334
Alignment:
Q  158 gcaatcttttactatgaaatgacat-gaattcaaacaaattcgaacaagtaaatcgttgtaaagaa 222  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||| || |||||||    
T  29597269 gcaatcttttactatgaaatgacatggatttcaaataaattcgaacaagtaaatcattctaaagaa 29597334  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29820924 - 29820969
Alignment:
Q  179 acatgaattcaaacaaattcgaacaagtaaatcgttgtaaagaaac 224  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  29820924 acatgaattcaaataaattcgaacaagtaaatcattgtaaagaaac 29820969  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 29594038 - 29594096
Alignment:
Q  228 acattattgcattaccaatagattgctttactctattatttttcaaattatagagaatt 286  Q
    ||||||||||| |||||| || |||||||||||||||  ||||||||||||| ||||||    
T  29594038 acattattgcactaccaaaagcttgctttactctattcgttttcaaattataaagaatt 29594096  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 29642697 - 29642652
Alignment:
Q  179 acatgaattcaaacaaattcgaacaagtaaatcgttgtaaagaaac 224  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  29642697 acatgaattcaaataaatttgaacaagtaaatcattgtaaagaaac 29642652  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 29597383 - 29597447
Alignment:
Q  222 aacacaacattattgcattaccaatagattgctttactctattatttttcaaattatagagaatt 286  Q
    ||||| || |||||||| ||||||||| || ||||||||||||  ||||||||||||| ||||||    
T  29597383 aacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaatt 29597447  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 29642604 - 29642540
Alignment:
Q  222 aacacaacattattgcattaccaatagattgctttactctattatttttcaaattatagagaatt 286  Q
    ||||| || |||||||| ||||||||| || ||||||||||||  ||||||||||||| ||||||    
T  29642604 aacaccacgttattgcactaccaatagctttctttactctatttgttttcaaattataaagaatt 29642540  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 48693190 - 48693270
Alignment:
Q  1 tgagttaactcatgttgaaaaagccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaaggg 81  Q
    |||||||||||| ||||||||| || ||| ||||||||||||| ||||||||  ||||| ||||||  |||||| ||||||    
T  48693190 tgagttaactcacgttgaaaaaaccaagcgtgagttaactcacgctggacataattaagggaatgagtaattttaaaaggg 48693270  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31251819 - 31251900
Alignment:
Q  1 tgagttaactcatgttgaaaaa-gccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaaggg 81  Q
    |||||||||||| ||||||||| | ||||| ||||||||||||   | ||||||||| ||  |||||||||||| |||||||    
T  31251819 tgagttaactcacgttgaaaaaagtcgagcgtgagttaactcatgttagacatttttcaggaaatgaacaatttagaaaggg 31251900  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 19325706 - 19325750
Alignment:
Q  180 catgaattcaaacaaattcgaacaagtaaatcgttgtaaagaaac 224  Q
    |||||||||||||||||| ||||||||||||| |  |||||||||    
T  19325706 catgaattcaaacaaattggaacaagtaaatcatcataaagaaac 19325750  T

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Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42002 - 42088
Alignment:
Q  1 tgagttaactcatgttgaaaaa-gccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaagggggagagc 88  Q
    |||||||| ||| ||||||||| ||||||  |||||||| ||||  |||  |||||||||||||||| |||||||||||||| ||||||    
T  42002 tgagttaattcaagttgaaaaaagccgag--tgagttaattcacgttgggtatttttaagagaatgagcaattttgaaagggagagagc 42088  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 32049128 - 32049168
Alignment:
Q  3 agttaactcatgttgaaaaagccgagcatgagttaactcac 43  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  32049128 agttaactcacgttgaaaaagccaagcatgagttaactcac 32049168  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 38276416 - 38276325
Alignment:
Q  1 tgagttaactcatgttgaaaaagccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaaggg-ggagagcaat 91  Q
    |||||||||||| ||||||||  |||||| ||||||||||||    ||||||  ||||| |||||| ||||||| |||||| ||||||||||    
T  38276416 tgagttaactcacgttgaaaagaccgagcgtgagttaactcatgtaggacataattaagggaatgagcaattttaaaagggaggagagcaat 38276325  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16645965 - 16646042
Alignment:
Q  1 tgagttaactcatgttgaaaaagccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaagg 80  Q
    |||||||||||| ||||||||||  ||||  ||||||| ||||||  |||||  ||||| ||||||||||||||||||||    
T  16645965 tgagttaactcacgttgaaaaagttgagcgagagttaattcacac--gacataattaagggaatgaacaattttgaaagg 16646042  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 39400119 - 39400043
Alignment:
Q  5 ttaactcatgttgaaaaagccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaaggg 81  Q
    ||||||||||||||||||||  ||| | ||||||||| ||  | | ||||||||| ||| |||||||||| ||||||    
T  39400119 ttaactcatgttgaaaaagctaagcgtaagttaactcgcagagaatatttttaagtgaacgaacaattttaaaaggg 39400043  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5953367 - 5953287
Alignment:
Q  1 tgagttaactcatgttgaaaaagccgagcatgagttaactcacactggacatttttaagagaatgaacaattttgaaaggg 81  Q
    |||||||||||| |||||||| ||||||| |||||||||| ||  | |||||   |||| |||||  ||||||||||||||    
T  5953367 tgagttaactcaagttgaaaaggccgagcctgagttaactaacgttagacataaataagggaatgctcaattttgaaaggg 5953287  T

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